Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACEZ45_RS13030 Genome accession   NZ_CP169877
Coordinates   2665105..2665800 (-) Length   231 a.a.
NCBI ID   WP_003152646.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2660105..2670800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZ45_RS13000 (ACEZ45_13000) - 2660120..2660923 (-) 804 WP_003152657.1 M23 family metallopeptidase -
  ACEZ45_RS13005 (ACEZ45_13005) minD 2661051..2661854 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  ACEZ45_RS13010 (ACEZ45_13010) minC 2661857..2662537 (-) 681 WP_032856922.1 septum site-determining protein MinC -
  ACEZ45_RS13015 (ACEZ45_13015) mreD 2662591..2663109 (-) 519 WP_003152650.1 rod shape-determining protein MreD -
  ACEZ45_RS13020 (ACEZ45_13020) mreC 2663106..2663969 (-) 864 WP_032856925.1 rod shape-determining protein MreC -
  ACEZ45_RS13025 (ACEZ45_13025) mreB 2664000..2665013 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACEZ45_RS13030 (ACEZ45_13030) ysxA/radC 2665105..2665800 (-) 696 WP_003152646.1 DNA repair protein RadC Machinery gene
  ACEZ45_RS13035 (ACEZ45_13035) - 2665832..2666401 (-) 570 WP_014305513.1 nucleoside triphosphate pyrophosphatase -
  ACEZ45_RS13040 (ACEZ45_13040) - 2666542..2667543 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  ACEZ45_RS13045 (ACEZ45_13045) comC 2667670..2668422 (-) 753 WP_003152643.1 A24 family peptidase Machinery gene
  ACEZ45_RS13050 (ACEZ45_13050) - 2668562..2669854 (-) 1293 WP_069473525.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26094.33 Da        Isoelectric Point: 9.1909

>NTDB_id=942129 ACEZ45_RS13030 WP_003152646.1 2665105..2665800(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JF]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=942129 ACEZ45_RS13030 WP_003152646.1 2665105..2665800(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JF]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGAACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

88.312

100

0.883
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429