Detailed information NTG0942121

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: V6P91_RS01870
• Genome accession: NZ_CP146223
• Coordinates: 416910..417461 (+)
• Length: 183 a.a.
• NCBI ID: WP_407274021.1
• Uniprot ID: -
• Organism: Dickeya sp. A5391
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	416910..429146	416910..417461	within	0

Gene organization within MGE regions

Location: 416910..429146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6P91_RS01870 (V6P91_01870)	ssb	416910..417461 (+)	552	WP_407274021.1	single-stranded DNA-binding protein	Machinery gene
V6P91_RS01875 (V6P91_01875)	-	417548..418123 (-)	576	WP_407274022.1	flavin reductase family protein	-
V6P91_RS01880 (V6P91_01880)	-	418176..418805 (-)	630	WP_342699851.1	NAD-dependent dehydratase	-
V6P91_RS01885 (V6P91_01885)	-	418898..419485 (+)	588	WP_407274023.1	hypothetical protein	-
V6P91_RS01890 (V6P91_01890)	-	419718..420299 (+)	582	WP_407274024.1	DUF4255 domain-containing protein	-
V6P91_RS01895 (V6P91_01895)	-	420296..421105 (+)	810	WP_407274025.1	hypothetical protein	-
V6P91_RS01900 (V6P91_01900)	-	421244..422797 (+)	1554	WP_016940536.1	phage tail sheath C-terminal domain-containing protein	-
V6P91_RS01905 (V6P91_01905)	-	422859..423329 (+)	471	WP_342699855.1	phage tail protein	-
V6P91_RS01910 (V6P91_01910)	-	423435..423893 (+)	459	WP_342699856.1	phage tail protein	-
V6P91_RS01915 (V6P91_01915)	-	423914..424114 (+)	201	WP_342699857.1	hypothetical protein	-
V6P91_RS01920 (V6P91_01920)	-	424129..424776 (+)	648	WP_342699858.1	peptidoglycan-binding protein	-
V6P91_RS01925 (V6P91_01925)	vgrG	424789..426579 (+)	1791	WP_407274026.1	type VI secretion system tip protein VgrG	-
V6P91_RS01930 (V6P91_01930)	-	426803..427822 (+)	1020	WP_038914950.1	IS110-like element ISEch3 family transposase	-
V6P91_RS01935 (V6P91_01935)	-	428425..428724 (+)	300	WP_016940542.1	PAAR domain-containing protein	-
V6P91_RS01940 (V6P91_01940)	-	428727..429146 (+)	420	WP_407274027.1	GPW/gp25 family protein	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 19565.56 Da
• Isoelectric Point: 5.2440

>NTDB_id=942121 V6P91_RS01870 WP_407274021.1 416910..417461(+) (ssb) [Dickeya sp. A5391]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRTGGGAPAAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 552 bp

>NTDB_id=942121 V6P91_RS01870 WP_407274021.1 416910..417461(+) (ssb) [Dickeya sp. A5391]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGCACCGGCGGCGGCGCACCTGCTGCTGGTGGCAACATGGGCGGCAATACGGGTG
GAGGTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCTAACCAGTTCAGCGGTGGCGGTCAATCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAACCACCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	73.797	100	0.754
ssb	Glaesserella parasuis strain SC1401	55.026	100	0.568
ssb	Neisseria meningitidis MC58	45.263	100	0.47
ssb	Neisseria gonorrhoeae MS11	45.263	100	0.47