Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V8H03_RS10890 Genome accession   NZ_CP146215
Coordinates   2161198..2161668 (-) Length   156 a.a.
NCBI ID   WP_000934759.1    Uniprot ID   A0A2I7Y8V1
Organism   Staphylococcus aureus strain KWT 2016-Z4326     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2156198..2166668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8H03_RS10830 (V8H03_10830) - 2156298..2156504 (-) 207 WP_000195820.1 DUF1381 domain-containing protein -
  V8H03_RS10835 (V8H03_10835) - 2156541..2157077 (-) 537 WP_001066444.1 dUTPase -
  V8H03_RS10840 (V8H03_10840) - 2157070..2157480 (-) 411 WP_000197967.1 hypothetical protein -
  V8H03_RS10845 (V8H03_10845) - 2157837..2157962 (-) 126 Protein_2099 DUF1024 family protein -
  V8H03_RS10850 (V8H03_10850) - 2157955..2158239 (-) 285 WP_001105604.1 hypothetical protein -
  V8H03_RS10855 (V8H03_10855) - 2158236..2158685 (-) 450 WP_000982711.1 YopX family protein -
  V8H03_RS10860 (V8H03_10860) - 2158750..2158998 (-) 249 WP_000178986.1 SAV1978 family virulence-associated passenger protein -
  V8H03_RS10865 (V8H03_10865) - 2158995..2159252 (-) 258 WP_000111491.1 DUF3310 domain-containing protein -
  V8H03_RS10870 (V8H03_10870) - 2159252..2159624 (-) 373 Protein_2104 SA1788 family PVL leukocidin-associated protein -
  V8H03_RS10875 (V8H03_10875) - 2159637..2160041 (-) 405 WP_000401969.1 RusA family crossover junction endodeoxyribonuclease -
  V8H03_RS10880 (V8H03_10880) - 2160050..2160268 (-) 219 WP_000338528.1 hypothetical protein -
  V8H03_RS10885 (V8H03_10885) - 2160275..2161168 (-) 894 WP_000148333.1 DnaD domain-containing protein -
  V8H03_RS10890 (V8H03_10890) ssbA 2161198..2161668 (-) 471 WP_000934759.1 single-stranded DNA-binding protein Machinery gene
  V8H03_RS10895 (V8H03_10895) - 2161669..2162286 (-) 618 WP_064135358.1 MBL fold metallo-hydrolase -
  V8H03_RS10900 (V8H03_10900) - 2162367..2163287 (-) 921 WP_000180598.1 recombinase RecT -
  V8H03_RS10905 (V8H03_10905) - 2163289..2165232 (-) 1944 WP_000700555.1 AAA family ATPase -
  V8H03_RS10910 (V8H03_10910) - 2165241..2165504 (-) 264 WP_001205732.1 hypothetical protein -
  V8H03_RS10915 (V8H03_10915) - 2165513..2165773 (-) 261 WP_001814567.1 DUF1108 family protein -
  V8H03_RS10920 (V8H03_10920) - 2165754..2166083 (-) 330 WP_000138304.1 hypothetical protein -
  V8H03_RS10925 (V8H03_10925) - 2166173..2166334 (-) 162 WP_000066017.1 DUF1270 domain-containing protein -
  V8H03_RS10930 (V8H03_10930) - 2166331..2166651 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=942110 V8H03_RS10890 WP_000934759.1 2161198..2161668(-) (ssbA) [Staphylococcus aureus strain KWT 2016-Z4326]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=942110 V8H03_RS10890 WP_000934759.1 2161198..2161668(-) (ssbA) [Staphylococcus aureus strain KWT 2016-Z4326]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365