Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8665_RS07125 Genome accession   NZ_AP028386
Coordinates   1366488..1367495 (+) Length   335 a.a.
NCBI ID   WP_002862037.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1361488..1372495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS07110 (B11348_13920) - 1363165..1365422 (-) 2258 Protein_1383 autotransporter outer membrane beta-barrel domain-containing protein -
  R8665_RS07120 (B11348_13940) - 1365987..1366397 (-) 411 WP_002783915.1 hypothetical protein -
  R8665_RS07125 (B11348_13950) ruvB 1366488..1367495 (+) 1008 WP_002862037.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8665_RS07130 (B11348_13960) amaA 1367499..1368542 (+) 1044 WP_002862038.1 AI-2E family transporter -
  R8665_RS07135 (B11348_13970) fumC 1368572..1369963 (-) 1392 WP_317676848.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37311.85 Da        Isoelectric Point: 4.9081

>NTDB_id=94203 R8665_RS07125 WP_002862037.1 1366488..1367495(+) (ruvB) [Campylobacter jejuni strain BCH-11348]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=94203 R8665_RS07125 WP_002862037.1 1366488..1367495(+) (ruvB) [Campylobacter jejuni strain BCH-11348]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCTAAAAAACGCAACGAATGTTTGGATC
ATATACTTTTTAGCGGTCCTGCAGGACTTGGAAAAACAACACTAGCCAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACTAATCTTAGCGAAGGGGATATACT
TTTTATCGATGAAATTCACCGCTTAAGCCCTGCTATCGAAGAAGTACTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGCCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACTCGT
GCAGGTATGCTTAGCAATCCTTTGCGCGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCCGATGTTAATGATGAAGAAATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGCACGAAAAGC
TATAGTGCTTTAAAATTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.162

99.701

0.69
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.067

97.313

0.516
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475
  ruvB Streptococcus pneumoniae TIGR4

48.024

98.209

0.472
  ruvB Streptococcus pneumoniae R6

48.024

98.209

0.472
  ruvB Streptococcus pneumoniae D39

48.024

98.209

0.472