Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6985_RS19575 Genome accession   NZ_CP146071
Coordinates   4229806..4230396 (+) Length   196 a.a.
NCBI ID   WP_005316531.1    Uniprot ID   T0QMQ0
Organism   Aeromonas salmonicida strain GMT3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4224806..4235396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6985_RS19565 (V6985_19570) uvrA 4225700..4228528 (-) 2829 WP_087756677.1 excinuclease ABC subunit UvrA -
  V6985_RS19570 (V6985_19575) - 4228624..4229286 (-) 663 WP_059114037.1 LuxR C-terminal-related transcriptional regulator -
  V6985_RS19575 (V6985_19580) ssb 4229806..4230396 (+) 591 WP_005316531.1 single-stranded DNA-binding protein Machinery gene
  V6985_RS19580 (V6985_19585) - 4230565..4231323 (+) 759 WP_005316528.1 ABC transporter substrate-binding protein -
  V6985_RS19585 (V6985_19590) - 4231399..4231521 (-) 123 WP_005316524.1 hypothetical protein -
  V6985_RS19590 (V6985_19595) - 4231977..4232855 (+) 879 WP_409011415.1 cation diffusion facilitator family transporter -
  V6985_RS19595 (V6985_19600) - 4233028..4233312 (+) 285 WP_011899186.1 DUF3811 domain-containing protein -
  V6985_RS19600 (V6985_19605) cspA 4233806..4234018 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21485.97 Da        Isoelectric Point: 5.9301

>NTDB_id=941561 V6985_RS19575 WP_005316531.1 4229806..4230396(+) (ssb) [Aeromonas salmonicida strain GMT3]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEVLVDSFSGVMQMLGGRPQGGAGQNMGGQPQAQGNWGQPQQGMPAQQPVNQARPAAAPQQ
NMQQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=941561 V6985_RS19575 WP_005316531.1 4229806..4230396(+) (ssb) [Aeromonas salmonicida strain GMT3]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGTGTGGTATTCATGGGCAAGCTGGCCGAAGTGGCTGGTGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTC
GAAGGGAAACTGCAGACTCGCAAATGGCAGGATCAAGGTGGCCAAGAGCGTTATACCACCGAAGTGCTGGTAGACAGCTT
CAGTGGCGTGATGCAGATGCTGGGTGGTCGCCCGCAAGGTGGCGCTGGCCAAAACATGGGTGGCCAACCTCAAGCGCAAG
GCAACTGGGGTCAACCGCAACAAGGCATGCCAGCCCAGCAGCCGGTAAACCAGGCTCGTCCTGCCGCCGCACCGCAGCAG
AACATGCAGCAGCCACAAGGCGGTTATGGTCGTCCGGCCCAGCAGCCCCAGTCAGCACCGCCTGTCTACAACGAGCCGCC
GATGGACTTCGACGACGATATCCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0QMQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.172

100

0.679
  ssb Glaesserella parasuis strain SC1401

54.404

98.469

0.536
  ssb Neisseria meningitidis MC58

48.187

98.469

0.474
  ssb Neisseria gonorrhoeae MS11

47.668

98.469

0.469