Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   V5M36_RS14780 Genome accession   NZ_CP145906
Coordinates   3263419..3264570 (+) Length   383 a.a.
NCBI ID   WP_338560364.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3258419..3269570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS14760 (V5M36_14760) - 3258827..3260950 (-) 2124 WP_338560357.1 TonB-dependent copper receptor -
  V5M36_RS14765 (V5M36_14765) - 3261040..3261504 (-) 465 WP_338560358.1 DUF2946 family protein -
  V5M36_RS14770 (V5M36_14770) def 3261601..3262131 (-) 531 WP_338560359.1 peptide deformylase -
  V5M36_RS14775 (V5M36_14775) tsaP 3262255..3263406 (+) 1152 WP_338560362.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  V5M36_RS14780 (V5M36_14780) dprA 3263419..3264570 (+) 1152 WP_338560364.1 DNA-processing protein DprA Machinery gene
  V5M36_RS14785 (V5M36_14785) - 3264611..3265180 (+) 570 WP_338560366.1 Sua5/YciO/YrdC/YwlC family protein -
  V5M36_RS14790 (V5M36_14790) - 3265622..3266506 (-) 885 WP_338560368.1 DMT family transporter -
  V5M36_RS14795 (V5M36_14795) - 3266874..3267401 (+) 528 WP_338560371.1 hypothetical protein -
  V5M36_RS14800 (V5M36_14800) - 3267575..3268117 (+) 543 WP_338560373.1 glutathione peroxidase -
  V5M36_RS14805 (V5M36_14805) - 3268412..3269035 (+) 624 WP_338560376.1 hypothetical protein -
  V5M36_RS14810 (V5M36_14810) - 3269112..3269531 (-) 420 WP_338564258.1 hypothetical protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43076.04 Da        Isoelectric Point: 6.7833

>NTDB_id=941079 V5M36_RS14780 WP_338560364.1 3263419..3264570(+) (dprA) [Acinetobacter sp. KS-LM10]
MLNEISEVQLSYIKLWYLVQHSLSSFHKVIQHFGSVENAVQPKHLNRWAELNIHKNHIQRATDFSSVTGQFQFNQCLDKI
KLHTDFILLDIEDDYPKQLMPYTDRPPILFGQGNLQNLSQAQLAIVGSRKPSPHGKQVAFDFAFYMSQKGFFITSGLAQG
IDEAAHLGALKNQRTIAVIGTGLDQVYPSQNRSLQQNILDHSGTVISEFLPETKPLKHNFPRRNRIVSGLSLGVLVAEAK
LESGSLITAQAAANQGKTTFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPAQWQHQQNQPLTKISSIEAQEI
SPQIPQHLYKIYQQLDWVGQDLDQLAHALNSDTAQLTAALMELELMGFVIQQSGLFLRCRQIN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=941079 V5M36_RS14780 WP_338560364.1 3263419..3264570(+) (dprA) [Acinetobacter sp. KS-LM10]
ATGTTAAATGAGATCTCTGAAGTTCAGTTAAGCTACATCAAACTTTGGTATCTCGTTCAACATTCTCTTTCTTCATTTCA
TAAAGTCATTCAACATTTTGGATCTGTTGAAAATGCGGTTCAGCCCAAACATTTAAATCGTTGGGCTGAACTTAATATTC
ATAAAAATCATATTCAACGTGCGACTGATTTTTCAAGTGTTACGGGGCAATTTCAATTCAACCAATGTTTGGATAAAATT
AAACTGCATACAGATTTCATTCTGCTCGATATTGAAGATGATTATCCCAAACAACTCATGCCCTATACAGATCGCCCACC
TATTTTATTTGGTCAGGGAAATTTACAAAATTTAAGCCAAGCCCAACTGGCGATCGTCGGCAGTCGCAAACCCAGTCCGC
ATGGCAAACAAGTCGCCTTTGATTTTGCTTTTTACATGAGTCAAAAGGGCTTTTTTATCACCAGTGGCCTAGCCCAAGGC
ATCGATGAAGCGGCACATTTAGGTGCGCTCAAAAACCAACGTACTATTGCTGTGATTGGGACAGGATTAGATCAGGTTTA
TCCTAGCCAAAATCGCAGCTTACAACAAAATATATTAGATCACTCAGGAACTGTTATTTCCGAATTTCTTCCTGAAACCA
AACCTCTCAAACATAATTTTCCTCGACGGAATCGAATTGTGAGCGGCTTAAGTCTGGGCGTTTTAGTTGCTGAAGCAAAA
CTTGAAAGCGGTTCACTCATCACAGCACAAGCAGCGGCGAATCAAGGTAAAACTACATTCGCCATTCCGGGTCATATTTA
CAGTGAATTTCATCAAGGCTGTCATCAATTGATTCGTGAAGGTGCGATTTTAGTGGATCATCCTGAGCAAATTATTGAGG
ATCTAGCTTTACCTGCGCAATGGCAACATCAACAAAATCAGCCTTTAACTAAAATAAGCAGTATTGAAGCGCAAGAAATA
AGTCCGCAGATTCCTCAGCATCTTTATAAGATTTACCAACAATTAGATTGGGTGGGCCAAGATTTAGATCAGTTAGCTCA
TGCACTCAATTCTGATACGGCGCAATTAACGGCAGCCCTCATGGAGTTAGAGCTTATGGGGTTTGTTATTCAACAATCAG
GACTATTTCTACGTTGCCGTCAGATTAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.579

99.217

0.611

  dprA Acinetobacter baumannii D1279779

61.316

99.217

0.608

  dprA Acinetobacter baylyi ADP1

59.737

99.217

0.593