Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   V5M36_RS14775 Genome accession   NZ_CP145906
Coordinates   3262255..3263406 (+) Length   383 a.a.
NCBI ID   WP_338560362.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3257255..3268406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS14755 (V5M36_14755) - 3257271..3258479 (+) 1209 WP_338560355.1 oxygenase MpaB family protein -
  V5M36_RS14760 (V5M36_14760) - 3258827..3260950 (-) 2124 WP_338560357.1 TonB-dependent copper receptor -
  V5M36_RS14765 (V5M36_14765) - 3261040..3261504 (-) 465 WP_338560358.1 DUF2946 family protein -
  V5M36_RS14770 (V5M36_14770) def 3261601..3262131 (-) 531 WP_338560359.1 peptide deformylase -
  V5M36_RS14775 (V5M36_14775) tsaP 3262255..3263406 (+) 1152 WP_338560362.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  V5M36_RS14780 (V5M36_14780) dprA 3263419..3264570 (+) 1152 WP_338560364.1 DNA-processing protein DprA Machinery gene
  V5M36_RS14785 (V5M36_14785) - 3264611..3265180 (+) 570 WP_338560366.1 Sua5/YciO/YrdC/YwlC family protein -
  V5M36_RS14790 (V5M36_14790) - 3265622..3266506 (-) 885 WP_338560368.1 DMT family transporter -
  V5M36_RS14795 (V5M36_14795) - 3266874..3267401 (+) 528 WP_338560371.1 hypothetical protein -
  V5M36_RS14800 (V5M36_14800) - 3267575..3268117 (+) 543 WP_338560373.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41880.19 Da        Isoelectric Point: 9.4124

>NTDB_id=941078 V5M36_RS14775 WP_338560362.1 3262255..3263406(+) (tsaP) [Acinetobacter sp. KS-LM10]
MKKVLYSLGLFQAKGLKKQCLAVALCLSAGFMTTQITQASPNISPPALKSSAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLDGRPLIGKDEGDGCEGVIRRHLGGVTLKPQVRVESLNNTIPIIPLAHIQPWLDHS
IVVAPESIQNTPYILGTADNRIVAGQGQTVYARGQGISLGQSYGVYREGKPYIFIDQNGKKYNAGLELTEVASATAVADE
NNIATLELTKSFNAEVRRGDYVLPKYDANLPSLFYPATNTDIVPDGKIIRVMGSIGTAAQHSVVSIDRGAQHGSKQGHVL
SVFQQGEVIKDPKTNEVVKLPSQRVGNVMIFKVFDQLSYAYVLDSTLPIKVGAELKPSPMTEN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=941078 V5M36_RS14775 WP_338560362.1 3262255..3263406(+) (tsaP) [Acinetobacter sp. KS-LM10]
ATGAAAAAGGTTTTATATAGCCTGGGACTTTTCCAAGCTAAGGGGTTAAAAAAACAATGTCTTGCAGTGGCCCTATGTTT
AAGTGCTGGCTTCATGACAACTCAAATCACACAAGCAAGTCCAAATATAAGCCCACCCGCATTAAAATCTAGCGCCCCAC
ATGTGTATGTTGTAAAAAAGGGAGATACTCTGTGGGATATCTCGGGTAAATTTTTAAGTAAACCTTGGCGTTGGCCTGAA
ATTTGGGCATCAAATAAACATGTCAAAAATCCACATTGGATTTATCCAGGAGATCGACTACTTCTCTGTACCTTAGATGG
TCGCCCACTTATTGGTAAAGATGAGGGCGATGGTTGTGAGGGTGTCATCCGACGTCATTTGGGTGGAGTTACGCTTAAAC
CACAAGTTCGCGTAGAGTCACTGAATAATACCATTCCAATCATTCCATTGGCGCATATTCAGCCTTGGTTAGATCATAGT
ATTGTCGTTGCTCCAGAATCTATACAAAACACACCTTATATTTTAGGCACTGCAGATAATCGTATTGTCGCAGGACAAGG
TCAAACTGTTTATGCGCGCGGTCAAGGTATTTCATTAGGTCAATCTTATGGTGTTTATCGTGAAGGTAAACCGTATATTT
TCATCGATCAAAATGGCAAAAAATACAATGCAGGTTTAGAGCTCACTGAAGTCGCTTCTGCTACAGCAGTGGCCGATGAG
AATAATATTGCAACCCTAGAACTGACCAAAAGTTTTAATGCTGAAGTACGTCGTGGTGATTACGTCTTACCAAAATATGA
TGCTAATTTGCCAAGTTTATTCTATCCAGCAACCAACACAGATATTGTTCCAGATGGCAAAATCATTCGTGTCATGGGTT
CTATTGGAACGGCTGCCCAACATAGTGTGGTAAGTATTGATCGAGGTGCGCAACACGGCTCAAAACAAGGTCATGTGCTC
AGTGTCTTTCAACAAGGTGAAGTGATCAAAGATCCTAAAACCAATGAAGTGGTCAAGCTACCAAGTCAACGCGTTGGCAA
TGTCATGATCTTTAAAGTGTTTGATCAATTGAGCTATGCCTATGTGCTAGATAGCACCTTACCGATTAAAGTGGGTGCAG
AATTAAAACCATCACCAATGACTGAAAATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

62.434

98.695

0.616