Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V5M36_RS01000 Genome accession   NZ_CP145906
Coordinates   228692..229279 (+) Length   195 a.a.
NCBI ID   WP_338561105.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223692..234279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS00980 (V5M36_00980) - 224312..224686 (-) 375 WP_338561096.1 hypothetical protein -
  V5M36_RS00985 (V5M36_00985) tenA 225022..225684 (-) 663 WP_338561098.1 thiaminase II -
  V5M36_RS00990 (V5M36_00990) - 226043..227122 (+) 1080 WP_338561100.1 DUF475 domain-containing protein -
  V5M36_RS00995 (V5M36_00995) - 227276..228640 (+) 1365 WP_338561103.1 MFS transporter -
  V5M36_RS01000 (V5M36_01000) ssb 228692..229279 (+) 588 WP_338561105.1 single-stranded DNA-binding protein Machinery gene
  V5M36_RS01005 (V5M36_01005) - 229435..230661 (+) 1227 WP_338561106.1 site-specific integrase -
  V5M36_RS01010 (V5M36_01010) - 230654..232210 (+) 1557 WP_338561109.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21422.31 Da        Isoelectric Point: 7.2010

>NTDB_id=941049 V5M36_RS01000 WP_338561105.1 228692..229279(+) (ssb) [Acinetobacter sp. KS-LM10]
MRGVNKVILVGTLGKDPETKTFQNGGSLTQFSIATSESWTDKSSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSNNRQQNEGAGDSGYNQPRFNNNANANPAGGYAGQQGGGYNNAPAAAPQGN
YGNNVNQGFQSPKPQQQPAKPMASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=941049 V5M36_RS01000 WP_338561105.1 228692..229279(+) (ssb) [Acinetobacter sp. KS-LM10]
ATGCGCGGCGTAAATAAAGTAATCTTAGTTGGTACTTTGGGTAAAGACCCTGAAACAAAAACTTTTCAAAATGGCGGCTC
ATTGACTCAGTTTTCAATCGCAACCAGCGAATCGTGGACTGATAAAAGTTCAGGTGAACGTAAAGAGCAAACAGAGTGGC
ACCGTATTGTTTTGCATAACCGTTTAGGTGAAATTGCACAGCAATACCTTCGTAAAGGCTCTAAAGTTTATATCGAAGGT
TCATTACGTACTCGTCAGTGGACAGACCAAAGTGGTCAAGAGCGTTACACCACAGAAATTCGTGGTGAGCAAATGCAAAT
GCTTGATTCAAACAATCGTCAGCAAAATGAAGGTGCTGGAGATAGCGGTTATAATCAACCTCGTTTTAACAACAATGCCA
ATGCAAATCCAGCGGGCGGTTATGCGGGTCAACAGGGCGGTGGTTATAACAATGCACCTGCTGCTGCGCCACAAGGTAAT
TATGGCAACAATGTGAATCAAGGTTTCCAGTCACCTAAACCACAACAGCAACCTGCGAAGCCAATGGCAAGCGCACCTGC
TGATTTAGATGACGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.78

100

0.513
  ssb Vibrio cholerae strain A1552

43.35

100

0.451
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369
  ssb Neisseria meningitidis MC58

36.979

98.462

0.364