Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAEM60_RS22985 Genome accession   NZ_CP145886
Coordinates   4616814..4617329 (-) Length   171 a.a.
NCBI ID   WP_034764778.1    Uniprot ID   A0A5D4UC39
Organism   Rossellomorea sp. y25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4611814..4622329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS22970 (V2W31_22970) - 4612779..4613702 (-) 924 WP_299745543.1 YybS family protein -
  AAEM60_RS22975 (V2W31_22975) - 4614244..4616304 (-) 2061 WP_299745545.1 methyl-accepting chemotaxis protein -
  AAEM60_RS22980 (V2W31_22980) rpsR 4616536..4616772 (-) 237 WP_034764780.1 30S ribosomal protein S18 -
  AAEM60_RS22985 (V2W31_22985) ssbA 4616814..4617329 (-) 516 WP_034764778.1 single-stranded DNA-binding protein Machinery gene
  AAEM60_RS22990 (V2W31_22990) rpsF 4617409..4617696 (-) 288 WP_034764776.1 30S ribosomal protein S6 -
  AAEM60_RS22995 (V2W31_22995) ychF 4617982..4619082 (-) 1101 WP_299745556.1 redox-regulated ATPase YchF -
  AAEM60_RS23000 (V2W31_23000) - 4619887..4620087 (-) 201 WP_044340265.1 DUF951 domain-containing protein -
  AAEM60_RS23005 (V2W31_23005) - 4620101..4621039 (-) 939 WP_299745562.1 mechanosensitive ion channel family protein -
  AAEM60_RS23010 (V2W31_23010) yyaC 4621300..4621920 (+) 621 WP_299745565.1 spore protease YyaC -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18962.70 Da        Isoelectric Point: 4.8013

>NTDB_id=940932 AAEM60_RS22985 WP_034764778.1 4616814..4617329(-) (ssbA) [Rossellomorea sp. y25]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSANQGDRGGSPGYSGGGQRDQGNPYSQNQNQQRNNNNNNNYTRVDEDPFANDGQ
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=940932 AAEM60_RS22985 WP_034764778.1 4616814..4617329(-) (ssbA) [Rossellomorea sp. y25]
ATGATGAACCGAGTTGTATTAGTAGGGCGTTTAACCAAAGACCCTGAATTAAAATATACTCCAAGTGGAGTGGCTGTAGC
TTCGTTTACACTGGCTGTCAATCGTAGTTTTACGAATCAATCAGGAGAACGGGAAGCAGATTTTATTAACTGTGTTGTAT
GGCGTCGCCCTGCAGAGAATGTAGCAAACTTTCTTAAAAAAGGCAGCTTAGCTGGCGTTGACGGTCGTATTCAAACACGT
AATTTCGAAGGACAGGATGGACGTCGTGTGTTTATGACGGAAGTTGTAGCAGAAAGCGTTCAGTTCTTAGAACCGCGTAG
TGCGAATCAAGGCGATCGTGGAGGAAGTCCGGGCTATTCGGGTGGAGGTCAACGTGACCAAGGAAATCCGTATAGTCAGA
ATCAGAATCAACAACGCAACAACAATAATAACAACAACTATACACGTGTAGATGAGGATCCATTTGCAAATGACGGTCAG
CCGATCGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4UC39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.75

100

0.708
  ssb Latilactobacillus sakei subsp. sakei 23K

56.18

100

0.585
  ssb Glaesserella parasuis strain SC1401

35.754

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374