Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   V6U69_RS02920 Genome accession   NZ_CP145867
Coordinates   558258..559751 (+) Length   497 a.a.
NCBI ID   WP_410534139.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 553258..564751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS02910 (V6U69_02910) amiA 554076..556046 (+) 1971 WP_410534138.1 peptide ABC transporter substrate-binding protein Regulator
  V6U69_RS02915 (V6U69_02915) amiA 556227..558197 (+) 1971 WP_060971833.1 peptide ABC transporter substrate-binding protein Regulator
  V6U69_RS02920 (V6U69_02920) amiC 558258..559751 (+) 1494 WP_410534139.1 ABC transporter permease Regulator
  V6U69_RS02925 (V6U69_02925) amiD 559751..560677 (+) 927 WP_107373260.1 oligopeptide ABC transporter permease OppC Regulator
  V6U69_RS02930 (V6U69_02930) amiE 560687..561772 (+) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS02935 (V6U69_02935) amiF 561765..562694 (+) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U69_RS02940 (V6U69_02940) - 562745..563530 (-) 786 WP_201036015.1 ABC transporter permease -
  V6U69_RS02945 (V6U69_02945) - 563542..564240 (-) 699 WP_037601748.1 ABC transporter ATP-binding protein -
  V6U69_RS02950 (V6U69_02950) - 564245..564622 (-) 378 WP_021143815.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55889.65 Da        Isoelectric Point: 9.9934

>NTDB_id=940775 V6U69_RS02920 WP_410534139.1 558258..559751(+) (amiC) [Streptococcus salivarius strain KSS10]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKVSSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSISTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=940775 V6U69_RS02920 WP_410534139.1 558258..559751(+) (amiC) [Streptococcus salivarius strain KSS10]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTATATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTACATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTACTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATACTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTTAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGTCAAGGACAAACACAAAGTTCTGAGGTCAACTTCCCTACTGGTAAGAAGGTATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCTAGAGATCGTTCTTACTATGGAAATGACCCATATAC
AGCGACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAATACACTCTTTGATAGTATTTCAACTGGTGTCTTG
ACTTTCTTGCTCTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTTTTGTCTACACCAGGTC
TTGCCATTTGGATTCGTCGTTACATGATTGACTTGCAGTCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTTGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

99.195

100

0.992
  amiC Streptococcus thermophilus LMG 18311

97.384

100

0.974
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974