Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6U69_RS02925 Genome accession   NZ_CP145867
Coordinates   559751..560677 (+) Length   308 a.a.
NCBI ID   WP_107373260.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 554751..565677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS02915 (V6U69_02915) amiA 556227..558197 (+) 1971 WP_060971833.1 peptide ABC transporter substrate-binding protein Regulator
  V6U69_RS02920 (V6U69_02920) amiC 558258..559751 (+) 1494 WP_410534139.1 ABC transporter permease Regulator
  V6U69_RS02925 (V6U69_02925) amiD 559751..560677 (+) 927 WP_107373260.1 oligopeptide ABC transporter permease OppC Regulator
  V6U69_RS02930 (V6U69_02930) amiE 560687..561772 (+) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS02935 (V6U69_02935) amiF 561765..562694 (+) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U69_RS02940 (V6U69_02940) - 562745..563530 (-) 786 WP_201036015.1 ABC transporter permease -
  V6U69_RS02945 (V6U69_02945) - 563542..564240 (-) 699 WP_037601748.1 ABC transporter ATP-binding protein -
  V6U69_RS02950 (V6U69_02950) - 564245..564622 (-) 378 WP_021143815.1 GntR family transcriptional regulator -
  V6U69_RS02955 (V6U69_02955) - 564804..565598 (+) 795 WP_410534140.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34635.78 Da        Isoelectric Point: 9.7054

>NTDB_id=940776 V6U69_RS02925 WP_107373260.1 559751..560677(+) (amiD) [Streptococcus salivarius strain KSS10]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=940776 V6U69_RS02925 WP_107373260.1 559751..560677(+) (amiD) [Streptococcus salivarius strain KSS10]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTTATGTTGGGTATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCCCTCTTCGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAATATGATCTTTGCCATGACTGTTACAGGGTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGTACACTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTAGTGTCAGTTATCGTAACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTAGGGCTTCCTGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACTTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.026

100

0.99
  amiD Streptococcus thermophilus LMG 18311

96.753

100

0.968
  amiD Streptococcus thermophilus LMD-9

96.753

100

0.968