Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V6U69_RS02935 Genome accession   NZ_CP145867
Coordinates   561765..562694 (+) Length   309 a.a.
NCBI ID   WP_021143812.1    Uniprot ID   A0AAX2V221
Organism   Streptococcus salivarius strain KSS10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 556765..567694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS02920 (V6U69_02920) amiC 558258..559751 (+) 1494 WP_410534139.1 ABC transporter permease Regulator
  V6U69_RS02925 (V6U69_02925) amiD 559751..560677 (+) 927 WP_107373260.1 oligopeptide ABC transporter permease OppC Regulator
  V6U69_RS02930 (V6U69_02930) amiE 560687..561772 (+) 1086 WP_002891435.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS02935 (V6U69_02935) amiF 561765..562694 (+) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6U69_RS02940 (V6U69_02940) - 562745..563530 (-) 786 WP_201036015.1 ABC transporter permease -
  V6U69_RS02945 (V6U69_02945) - 563542..564240 (-) 699 WP_037601748.1 ABC transporter ATP-binding protein -
  V6U69_RS02950 (V6U69_02950) - 564245..564622 (-) 378 WP_021143815.1 GntR family transcriptional regulator -
  V6U69_RS02955 (V6U69_02955) - 564804..565598 (+) 795 WP_410534140.1 HAD family hydrolase -
  V6U69_RS02960 (V6U69_02960) - 565591..566409 (+) 819 WP_410534141.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35005.11 Da        Isoelectric Point: 6.8971

>NTDB_id=940778 V6U69_RS02935 WP_021143812.1 561765..562694(+) (amiF) [Streptococcus salivarius strain KSS10]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=940778 V6U69_RS02935 WP_021143812.1 561765..562694(+) (amiF) [Streptococcus salivarius strain KSS10]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTAGTCATGCAACCTGATCTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTCGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

100

100

1
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977