Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6U69_RS02380 Genome accession   NZ_CP145867
Coordinates   448086..448781 (+) Length   231 a.a.
NCBI ID   WP_021143743.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443086..453781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS02355 (V6U69_02355) - 443281..444870 (+) 1590 WP_037602793.1 DEAD/DEAH box helicase -
  V6U69_RS02360 (V6U69_02360) - 445072..445341 (-) 270 WP_008535312.1 GIY-YIG nuclease family protein -
  V6U69_RS02365 (V6U69_02365) - 445345..446109 (-) 765 WP_410534105.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6U69_RS02370 (V6U69_02370) - 446159..447094 (-) 936 WP_410534106.1 polysaccharide deacetylase family protein -
  V6U69_RS02375 (V6U69_02375) - 447223..447978 (+) 756 WP_410534107.1 lysophospholipid acyltransferase family protein -
  V6U69_RS02380 (V6U69_02380) comEA 448086..448781 (+) 696 WP_021143743.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6U69_RS02385 (V6U69_02385) comEC/celB 448771..451011 (+) 2241 WP_410534108.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6U69_RS02390 (V6U69_02390) - 451097..452359 (+) 1263 WP_410534109.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6U69_RS02395 (V6U69_02395) - 452425..452970 (+) 546 WP_048673823.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24504.46 Da        Isoelectric Point: 4.6690

>NTDB_id=940771 V6U69_RS02380 WP_021143743.1 448086..448781(+) (comEA) [Streptococcus salivarius strain KSS10]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKEGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQVSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESIYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=940771 V6U69_RS02380 WP_021143743.1 448086..448781(+) (comEA) [Streptococcus salivarius strain KSS10]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAAGAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACTGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAGGGGGCTGTGGCCAATCCAGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTGACTGA
CGCCATCAAAGCCGCTGGGGGAATGACCGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTAGCAACTAAGGATGAAAATCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGTGTCTGACAAAGGA
GGACAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGTGGCTTTCAGTCCGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACGTTAGATAAAATCAGAGAGTCCATCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(168-228)

SLBB domain (SLBB)

(85-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.177

100

0.892
  comEA/celA/cilE Streptococcus mitis SK321

40.435

99.567

0.403
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40.175

99.134

0.398
  comEA Latilactobacillus sakei subsp. sakei 23K

34.855

100

0.364