Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U68_RS09185 Genome accession   NZ_CP145866
Coordinates   1982761..1984731 (-) Length   656 a.a.
NCBI ID   WP_073689646.1    Uniprot ID   A0AAX2V295
Organism   Streptococcus salivarius strain KSS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977761..1989731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS09170 (V6U68_09150) - 1978352..1979242 (-) 891 WP_002891966.1 hypothetical protein -
  V6U68_RS09175 (V6U68_09155) - 1979298..1980605 (-) 1308 WP_037600068.1 GHKL domain-containing protein -
  V6U68_RS09180 (V6U68_09160) gltX 1981070..1982524 (-) 1455 WP_183135865.1 glutamate--tRNA ligase -
  V6U68_RS09185 (V6U68_09165) amiA 1982761..1984731 (-) 1971 WP_073689646.1 peptide ABC transporter substrate-binding protein Regulator
  V6U68_RS09190 (V6U68_09170) rplA 1984913..1985602 (-) 690 WP_073689647.1 50S ribosomal protein L1 -
  V6U68_RS09195 (V6U68_09175) rplK 1985702..1986127 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6U68_RS09200 (V6U68_09180) - 1986299..1986652 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  V6U68_RS09205 (V6U68_09185) - 1986747..1987244 (-) 498 WP_002891970.1 beta-class carbonic anhydrase -
  V6U68_RS09210 (V6U68_09190) - 1987397..1988092 (-) 696 WP_037598509.1 TIGR00266 family protein -
  V6U68_RS09215 (V6U68_09195) radA 1988181..1989542 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72992.81 Da        Isoelectric Point: 5.0132

>NTDB_id=940739 V6U68_RS09185 WP_073689646.1 1982761..1984731(-) (amiA) [Streptococcus salivarius strain KSS9]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGIKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGEFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPSYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVQKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940739 V6U68_RS09185 WP_073689646.1 1982761..1984731(-) (amiA) [Streptococcus salivarius strain KSS9]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCTTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ATATGACGACAGCCGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATACGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACCTATACTTACAAGATTCGTAAGGGTATCAAATGGTACACTTCAGACGG
CGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTGACAGGACTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACGCTTAGTCAACCAGAACCTTATTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGGAGAATTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGATCCGACTTCTATTCTCTATA
ACGGTCCATACCTTCTTAAATCTTTGACAACGAAATCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTACTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACAGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGTTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTACGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAAGATTTCGGAACTATGGTAATGGATCAATTACCAAGCTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAT
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGACTTGTCAGTAGGTGTTGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACA
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
AGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCATATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAGAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCTAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.665

100

0.697
  amiA3 Streptococcus thermophilus LMD-9

68.493

100

0.686
  amiA3 Streptococcus thermophilus LMG 18311

67.732

100

0.678