Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6U68_RS09215 Genome accession   NZ_CP145866
Coordinates   1988181..1989542 (-) Length   453 a.a.
NCBI ID   WP_072903619.1    Uniprot ID   A0A1V0HAK4
Organism   Streptococcus salivarius strain KSS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1983181..1994542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS09190 (V6U68_09170) rplA 1984913..1985602 (-) 690 WP_073689647.1 50S ribosomal protein L1 -
  V6U68_RS09195 (V6U68_09175) rplK 1985702..1986127 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6U68_RS09200 (V6U68_09180) - 1986299..1986652 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  V6U68_RS09205 (V6U68_09185) - 1986747..1987244 (-) 498 WP_002891970.1 beta-class carbonic anhydrase -
  V6U68_RS09210 (V6U68_09190) - 1987397..1988092 (-) 696 WP_037598509.1 TIGR00266 family protein -
  V6U68_RS09215 (V6U68_09195) radA 1988181..1989542 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene
  V6U68_RS09220 (V6U68_09200) - 1989539..1990006 (-) 468 WP_201041165.1 isochorismatase family protein -
  V6U68_RS09225 (V6U68_09205) - 1990016..1990462 (-) 447 WP_410531670.1 dUTP diphosphatase -
  V6U68_RS09230 (V6U68_09210) - 1990669..1991271 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  V6U68_RS09235 (V6U68_09215) - 1991290..1992540 (+) 1251 WP_002891978.1 NAD(P)H-dependent oxidoreductase -
  V6U68_RS09240 (V6U68_09220) - 1992657..1993448 (+) 792 WP_014635096.1 formate/nitrite transporter family protein -
  V6U68_RS09245 (V6U68_09225) - 1993457..1994017 (+) 561 WP_073686086.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.83 Da        Isoelectric Point: 6.6528

>NTDB_id=940740 V6U68_RS09215 WP_072903619.1 1988181..1989542(-) (radA) [Streptococcus salivarius strain KSS9]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=940740 V6U68_RS09215 WP_072903619.1 1988181..1989542(-) (radA) [Streptococcus salivarius strain KSS9]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCGCCCAAATATCTAGGGCGCTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAAGAAGAGGTTGAGGTGCAGGAGGTGAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CTAAACCAACTAAATTAAAAGAAGTATCCTCAATCAATTATGCTCGCATAAAGACTGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGCAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCAACCCTCCTCTTACA
GGTGTCAACGCAACTGGCTAACAAGGGTACGGTCCTCTATGTATCTGGAGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCCGTTCGCAGTCAAGTAGAG
GCCATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACAATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCAGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAGGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTCAAATTGGACGAGCCAGCTATTGACCTTGCTGTAGCGGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGGTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGCATTAATGAAGCTGCTAAATTAGGTTTTACTAAGATTTATGCTCCGAAGAATTCCCT
GCATGGCATGAAAATTCCAGAAGGTATCCAGGTCGTTGGAGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0HAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614