Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6U68_RS07725 Genome accession   NZ_CP145866
Coordinates   1692208..1692903 (-) Length   231 a.a.
NCBI ID   WP_410531575.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS9     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1687208..1697903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U68_RS07710 (V6U68_07690) - 1688019..1688564 (-) 546 WP_073689615.1 GNAT family N-acetyltransferase -
  V6U68_RS07715 (V6U68_07695) - 1688630..1689892 (-) 1263 WP_073689616.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6U68_RS07720 (V6U68_07700) comEC/celB 1689978..1692218 (-) 2241 WP_410531574.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6U68_RS07725 (V6U68_07705) comEA 1692208..1692903 (-) 696 WP_410531575.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6U68_RS07730 (V6U68_07710) - 1693012..1693767 (-) 756 WP_002948862.1 lysophospholipid acyltransferase family protein -
  V6U68_RS07735 (V6U68_07715) - 1693897..1694832 (+) 936 WP_410531576.1 polysaccharide deacetylase family protein -
  V6U68_RS07740 (V6U68_07720) - 1694882..1695646 (+) 765 WP_070655505.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6U68_RS07745 (V6U68_07725) - 1695650..1695919 (+) 270 WP_073686127.1 GIY-YIG nuclease family protein -
  V6U68_RS07750 (V6U68_07730) - 1696122..1697708 (-) 1587 WP_049545589.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24574.64 Da        Isoelectric Point: 4.7637

>NTDB_id=940732 V6U68_RS07725 WP_410531575.1 1692208..1692903(-) (comEA) [Streptococcus salivarius strain KSS9]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKEGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVVKPGVYTLKAGTRVTDAIKVAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQVSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESIYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=940732 V6U68_RS07725 WP_410531575.1 1692208..1692903(-) (comEA) [Streptococcus salivarius strain KSS9]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCTGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAAGAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACTGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAAGGAGCCGTAGTCAAGCCAGGGGTTTATACGCTAAAAGCGGGCACTAGAGTGACTGA
TGCCATCAAGGTCGCTGGGGGAATGACTGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTAGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGTGTCTGACAAAGGA
GGACAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACGTTAGATAAAATCAGAGAGTCCATCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(168-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.177

100

0.892
  comEA/celA/cilE Streptococcus mitis SK321

40.87

99.567

0.407
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40.611

99.134

0.403
  comEA Latilactobacillus sakei subsp. sakei 23K

35.27

100

0.368