Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U67_RS07095 Genome accession   NZ_CP145865
Coordinates   1574165..1576135 (-) Length   656 a.a.
NCBI ID   WP_022496731.1    Uniprot ID   A0AB33Z9W3
Organism   Streptococcus salivarius strain KSS8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1569165..1581135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS07075 (V6U67_07085) amiF 1569668..1570597 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  V6U67_RS07080 (V6U67_07090) amiE 1570590..1571675 (-) 1086 WP_022496728.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS07085 (V6U67_07095) amiD 1571685..1572611 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U67_RS07090 (V6U67_07100) amiC 1572611..1574104 (-) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U67_RS07095 (V6U67_07105) amiA 1574165..1576135 (-) 1971 WP_022496731.1 peptide ABC transporter substrate-binding protein Regulator
  V6U67_RS07100 (V6U67_07110) amiA 1576317..1578287 (-) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator
  V6U67_RS07105 (V6U67_07115) pta 1578523..1579506 (-) 984 WP_037603038.1 phosphate acetyltransferase -
  V6U67_RS07110 (V6U67_07120) - 1579522..1580418 (-) 897 WP_022496734.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72885.17 Da        Isoelectric Point: 5.1940

>NTDB_id=940659 V6U67_RS07095 WP_022496731.1 1574165..1576135(-) (amiA) [Streptococcus salivarius strain KSS8]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNF
KDSQDGIFNANKAKAEFNKAKEALQADGVQFPIHLDLPVDQAAKPTVARAQSLKQSVENTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTYLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940659 V6U67_RS07095 WP_022496731.1 1574165..1576135(-) (amiA) [Streptococcus salivarius strain KSS8]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAAACATTGGACTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAATGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGATTGGACTGTTTCGGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCGGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAATTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTACGATGCTTCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCTGCACAACTTAATGGTGAAAAAGGTGCAGCCCTTGCTGTTCGTAACCTTCTCGTGAAACCTGATTTTGTTT
ATGCTGGTGATAAGTCATTCGGTGATTTGGTAACTGAAAAGATGGCTTCATATGGTGACGAGTGGTCAGGTGTTAACTTT
AAAGACAGTCAAGACGGTATCTTCAATGCTAATAAAGCGAAGGCTGAATTTAACAAAGCTAAGGAAGCTCTTCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCAGCTAAACCAACGGTTGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAATACACTTGGTAAAGAAAATGTCGTGGTGGATGTTCATCAAATGTCTCAAGATGATCTTCTAAAT
AGCACATTGTATGCAGCTAATGCAGCAGCAGAAGACTGGGATATCAATATCTCAGTAGCTTGGGCTCCTGACTATGAAGA
TCCATCAACATACCTCGATATCTTCAAAACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGACAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCAGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGAGCCTACTCTCAAGTAGGACCTAAAGGTTCTGACAGATACT
TCAAGTACCTCGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.457

100

0.755
  amiA3 Streptococcus thermophilus LMG 18311

75.038

100

0.752
  amiA3 Streptococcus thermophilus LMD-9

74.734

100

0.748