Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   V6U67_RS07080 Genome accession   NZ_CP145865
Coordinates   1570590..1571675 (-) Length   361 a.a.
NCBI ID   WP_022496728.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS8     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1565590..1576675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS07050 (V6U67_07060) - 1565954..1566772 (-) 819 WP_022496271.1 Cof-type HAD-IIB family hydrolase -
  V6U67_RS07055 (V6U67_07065) - 1566765..1567559 (-) 795 WP_022496272.1 HAD family hydrolase -
  V6U67_RS07060 (V6U67_07070) - 1567741..1568118 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  V6U67_RS07065 (V6U67_07075) - 1568123..1568821 (+) 699 WP_022496274.1 ABC transporter ATP-binding protein -
  V6U67_RS07070 (V6U67_07080) - 1568833..1569618 (+) 786 WP_037611821.1 hypothetical protein -
  V6U67_RS07075 (V6U67_07085) amiF 1569668..1570597 (-) 930 WP_022496727.1 ATP-binding cassette domain-containing protein Regulator
  V6U67_RS07080 (V6U67_07090) amiE 1570590..1571675 (-) 1086 WP_022496728.1 ABC transporter ATP-binding protein Regulator
  V6U67_RS07085 (V6U67_07095) amiD 1571685..1572611 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U67_RS07090 (V6U67_07100) amiC 1572611..1574104 (-) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U67_RS07095 (V6U67_07105) amiA 1574165..1576135 (-) 1971 WP_022496731.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39967.63 Da        Isoelectric Point: 4.6135

>NTDB_id=940656 V6U67_RS07080 WP_022496728.1 1570590..1571675(-) (amiE) [Streptococcus salivarius strain KSS8]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAAIRGSKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPEVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=940656 V6U67_RS07080 WP_022496728.1 1570590..1571675(-) (amiE) [Streptococcus salivarius strain KSS8]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACCAAGACCTTCACAGGGATGCTTGAAGAAAATGGTCGTGTCGCTAGTGGTTCTATTGATTATCGTGGCCAAGATTTG
ACCAAGCTTAAGAGTCACCAAGATTGGGCAGCAATTCGTGGATCTAAGATTGCAACTATCTTCCAAGATCCGATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGTCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCTAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAGAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGAGGGATGCGTCAACGTATCGTCATTGCCATCGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTCGATGTGACCATTCAAGCTCAAATCATTGACCTTTTGAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATCACCCATGACCTTGGTGTCGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TATGCAACTGTTGAGGAGATTTTCTATGAGCCTTGTCATCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGATGATAAGGGTGAGCTCTTCTCAATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGATTATGCCATGCAGATTGACTTCGAGGAAAAAGCACCGCAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGAGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.169

100

0.992

  amiE Streptococcus thermophilus LMG 18311

96.676

100

0.967

  amiE Streptococcus thermophilus LMD-9

96.676

100

0.967

  oppD Streptococcus mutans UA159

54.728

96.676

0.529