Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8618_RS06635 Genome accession   NZ_AP028383
Coordinates   1297595..1298602 (+) Length   335 a.a.
NCBI ID   WP_002882690.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292595..1303602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8618_RS06620 capC 1294274..1296530 (-) 2257 Protein_1283 autotransporter adhesin CapC -
  R8618_RS06630 (B11107_12980) - 1297094..1297504 (-) 411 WP_002783915.1 hypothetical protein -
  R8618_RS06635 (B11107_12990) ruvB 1297595..1298602 (+) 1008 WP_002882690.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8618_RS06640 (B11107_13000) amaA 1298606..1299649 (+) 1044 WP_002862038.1 AI-2E family transporter -
  R8618_RS06645 (B11107_13010) fumC 1299679..1301070 (-) 1392 WP_002927438.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37325.87 Da        Isoelectric Point: 4.9081

>NTDB_id=94064 R8618_RS06635 WP_002882690.1 1297595..1298602(+) (ruvB) [Campylobacter jejuni strain BCH-11107]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=94064 R8618_RS06635 WP_002882690.1 1297595..1298602(+) (ruvB) [Campylobacter jejuni strain BCH-11107]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTATGAAACTTCATTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTGCGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGGGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGGCTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGCACGAAAAGC
TATAGTGCTTTAAAATTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.761

97.313

0.513
  ruvB Synechocystis sp. PCC 6803

49.844

95.821

0.478
  ruvB Streptococcus pneumoniae TIGR4

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae R6

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae D39

48.328

98.209

0.475