Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6U66_RS08350 Genome accession   NZ_CP145864
Coordinates   1802140..1802838 (-) Length   232 a.a.
NCBI ID   WP_084870986.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1797140..1807838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS08335 (V6U66_08325) - 1797951..1798496 (-) 546 WP_013991031.1 GNAT family N-acetyltransferase -
  V6U66_RS08340 (V6U66_08330) - 1798562..1799824 (-) 1263 WP_013991032.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6U66_RS08345 (V6U66_08335) comEC/celB 1799910..1802150 (-) 2241 WP_155213929.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6U66_RS08350 (V6U66_08340) comEA 1802140..1802838 (-) 699 WP_084870986.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6U66_RS08355 (V6U66_08345) - 1802947..1803702 (-) 756 WP_084870987.1 lysophospholipid acyltransferase family protein -
  V6U66_RS08360 (V6U66_08350) - 1803832..1804767 (+) 936 WP_118172091.1 polysaccharide deacetylase family protein -
  V6U66_RS08365 (V6U66_08355) - 1804817..1805581 (+) 765 WP_118172087.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6U66_RS08370 (V6U66_08360) - 1805585..1805854 (+) 270 WP_118172086.1 GIY-YIG nuclease family protein -
  V6U66_RS08375 (V6U66_08365) - 1805946..1806332 (-) 387 WP_002886743.1 IS110 family transposase -
  V6U66_RS08380 (V6U66_08370) - 1806352..1807113 (-) 762 WP_002886742.1 IS110 family transposase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24468.38 Da        Isoelectric Point: 4.6300

>NTDB_id=940595 V6U66_RS08350 WP_084870986.1 1802140..1802838(-) (comEA) [Streptococcus salivarius strain KSS7]
MKEKILAYVKDNCLFVSVIAVLMVIFCFFLWMTYGAGNSMEAETSYTDVTALSTSSSSKQSSQSLSEASSQSKTEGSEKD
KLKVTVDVKGAVANPGVYTLKASARVTDAIKAAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTGQVSDK
GGQTSAKDGKINLNTATSEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 699 bp        

>NTDB_id=940595 V6U66_RS08350 WP_084870986.1 1802140..1802838(-) (comEA) [Streptococcus salivarius strain KSS7]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATTGTCTGTTTGTGAGTGTTATTGCTGTACTGATGGTGATTTTTTG
CTTCTTCCTATGGATGACTTATGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAGCTTTGTCAA
CCTCCTCCTCCTCCAAACAAAGCTCACAGTCTCTTTCTGAGGCGTCTTCCCAGTCAAAGACTGAAGGAAGTGAAAAGGAT
AAGTTAAAAGTAACGGTAGATGTTAAGGGGGCTGTGGCTAATCCAGGTGTTTATACCTTAAAAGCAAGCGCTAGGGTGAC
TGATGCCATCAAAGCTGCTGGGGGAATGACTGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGTCTGTCGGACG
AAGAGGTTATCTATGTGGCAACTAAGGATGAAAACCTCTCTGTTCTTGGTCAATCAGGAACTGGTCAGGTCTCTGACAAA
GGAGGGCAAACTAGTGCTAAGGATGGCAAAATTAACTTAAATACAGCAACCTCAGAGGAGTTGCAAACTATTTCTGGAAT
TGGAGCTAAGCGGGCAGAGGATATCATTGCCTATCGTGAAAGTCATGGAGGCTTTCAATCCGTAGATGACTTGAAAAATG
TCTCAGGAATTGGTGATAAAACTTTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-229)

SLBB domain (SLBB)

(86-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.224

100

0.892
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40.435

99.138

0.401
  comEA/celA/cilE Streptococcus mitis SK321

40

99.138

0.397