Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U65_RS09085 Genome accession   NZ_CP145863
Coordinates   1976455..1978425 (-) Length   656 a.a.
NCBI ID   WP_021144665.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971455..1983425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS09070 (V6U65_09065) - 1972052..1972942 (-) 891 WP_002885882.1 hypothetical protein -
  V6U65_RS09075 (V6U65_09070) - 1973002..1974309 (-) 1308 WP_002885760.1 GHKL domain-containing protein -
  V6U65_RS09080 (V6U65_09075) gltX 1974764..1976218 (-) 1455 WP_021144664.1 glutamate--tRNA ligase -
  V6U65_RS09085 (V6U65_09080) amiA 1976455..1978425 (-) 1971 WP_021144665.1 peptide ABC transporter substrate-binding protein Regulator
  V6U65_RS09090 (V6U65_09085) rplA 1978605..1979294 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  V6U65_RS09095 (V6U65_09090) rplK 1979394..1979819 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6U65_RS09100 (V6U65_09095) - 1979991..1980344 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  V6U65_RS09105 (V6U65_09100) - 1980440..1980937 (-) 498 WP_002885818.1 beta-class carbonic anhydrase -
  V6U65_RS09110 (V6U65_09105) - 1981088..1981783 (-) 696 WP_002885783.1 TIGR00266 family protein -
  V6U65_RS09115 (V6U65_09110) radA 1981870..1983231 (-) 1362 WP_081051385.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73034.85 Da        Isoelectric Point: 4.9084

>NTDB_id=940532 V6U65_RS09085 WP_021144665.1 1976455..1978425(-) (amiA) [Streptococcus salivarius strain KSS6]
MKKSKVFLLATVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNGENTKSFMGYDNPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKEK
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940532 V6U65_RS09085 WP_021144665.1 1976455..1978425(-) (amiA) [Streptococcus salivarius strain KSS6]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAACCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
TGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTCTCAAATGTTGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGCCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAATCTTCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTATTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACTGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAACAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCCATTGACCGTAC
AAATTACGCCGCACAACTTAACGGTAAGGAAGGTGGAAGCACTGCCGTTCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTGATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCATCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGACTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATGGTGAAAATACTAAATCTTTCATGGGTTATGACAATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCCGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATACGATTCAGCTTATAAAGATTGGCTTAAAGAAAAA
GCAAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.493

100

0.686
  amiA3 Streptococcus thermophilus LMG 18311

67.732

100

0.678