Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U64_RS02935 Genome accession   NZ_CP145862
Coordinates   571465..573435 (+) Length   656 a.a.
NCBI ID   WP_013990224.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 566465..578435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS02920 (V6U64_02920) - 567184..568080 (+) 897 WP_049554141.1 RluA family pseudouridine synthase -
  V6U64_RS02925 (V6U64_02925) pta 568094..569077 (+) 984 WP_155213521.1 phosphate acetyltransferase -
  V6U64_RS02930 (V6U64_02930) amiA 569313..571283 (+) 1971 WP_013990223.1 peptide ABC transporter substrate-binding protein Regulator
  V6U64_RS02935 (V6U64_02935) amiA 571465..573435 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  V6U64_RS02940 (V6U64_02940) amiC 573496..574989 (+) 1494 WP_155213238.1 ABC transporter permease Regulator
  V6U64_RS02945 (V6U64_02945) amiD 574989..575915 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6U64_RS02950 (V6U64_02950) amiE 575925..577010 (+) 1086 WP_048673696.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS02955 (V6U64_02955) amiF 577003..577932 (+) 930 WP_064519003.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72935.32 Da        Isoelectric Point: 5.2837

>NTDB_id=940436 V6U64_RS02935 WP_013990224.1 571465..573435(+) (amiA) [Streptococcus salivarius strain KSS4]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMPSYGDEWSGVNL
KDSQDGLFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940436 V6U64_RS02935 WP_013990224.1 571465..573435(+) (amiA) [Streptococcus salivarius strain KSS4]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAGACATTGGATTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGATTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAAGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGATTTTTCTAAAGTCGGCGTTAAA
GCACTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTGGCTAAAAATGAAAACTATTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTATGATGCATCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGTCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAAAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCCCTTGCTGTTCGTAACCTTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGCCTTCATATGGTGACGAGTGGTCAGGTGTTAACCTT
AAAGACAGTCAAGATGGTCTCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAAGCTAAGGAAGCTCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAT
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTGGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAGCCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.457

100

0.755
  amiA3 Streptococcus thermophilus LMG 18311

75.19

100

0.753
  amiA3 Streptococcus thermophilus LMD-9

75.19

100

0.753