Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6U64_RS02945 Genome accession   NZ_CP145862
Coordinates   574989..575915 (+) Length   308 a.a.
NCBI ID   WP_002884564.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 569989..580915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS02935 (V6U64_02935) amiA 571465..573435 (+) 1971 WP_013990224.1 peptide ABC transporter substrate-binding protein Regulator
  V6U64_RS02940 (V6U64_02940) amiC 573496..574989 (+) 1494 WP_155213238.1 ABC transporter permease Regulator
  V6U64_RS02945 (V6U64_02945) amiD 574989..575915 (+) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6U64_RS02950 (V6U64_02950) amiE 575925..577010 (+) 1086 WP_048673696.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS02955 (V6U64_02955) amiF 577003..577932 (+) 930 WP_064519003.1 ATP-binding cassette domain-containing protein Regulator
  V6U64_RS02960 (V6U64_02960) - 577984..578769 (-) 786 WP_410536944.1 ABC transporter permease -
  V6U64_RS02965 (V6U64_02965) - 578781..579479 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  V6U64_RS02970 (V6U64_02970) - 579484..579861 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U64_RS02975 (V6U64_02975) - 580043..580837 (+) 795 WP_002884689.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34609.70 Da        Isoelectric Point: 9.7054

>NTDB_id=940438 V6U64_RS02945 WP_002884564.1 574989..575915(+) (amiD) [Streptococcus salivarius strain KSS4]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVAIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=940438 V6U64_RS02945 WP_002884564.1 574989..575915(+) (amiD) [Streptococcus salivarius strain KSS4]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTTATGTTGGGTATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGCTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAACATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCGGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCTTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.701

100

0.987
  amiD Streptococcus thermophilus LMG 18311

96.104

100

0.961
  amiD Streptococcus thermophilus LMD-9

96.104

100

0.961