Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6T01_RS09290 Genome accession   NZ_CP145856
Coordinates   1999449..2001419 (-) Length   656 a.a.
NCBI ID   WP_037600082.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1994449..2006419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS09275 (V6T01_09250) - 1995038..1995928 (-) 891 WP_002891966.1 hypothetical protein -
  V6T01_RS09280 (V6T01_09255) - 1995984..1997291 (-) 1308 WP_037600068.1 GHKL domain-containing protein -
  V6T01_RS09285 (V6T01_09260) gltX 1997758..1999212 (-) 1455 WP_183135865.1 glutamate--tRNA ligase -
  V6T01_RS09290 (V6T01_09265) amiA 1999449..2001419 (-) 1971 WP_037600082.1 peptide ABC transporter substrate-binding protein Regulator
  V6T01_RS09295 (V6T01_09270) rplA 2001601..2002290 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  V6T01_RS09300 (V6T01_09275) rplK 2002390..2002815 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6T01_RS09305 (V6T01_09280) - 2002987..2003340 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  V6T01_RS09310 (V6T01_09285) - 2003435..2003932 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  V6T01_RS09315 (V6T01_09290) - 2004083..2004778 (-) 696 WP_002885783.1 TIGR00266 family protein -
  V6T01_RS09320 (V6T01_09295) radA 2004855..2006216 (-) 1362 WP_410541529.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72964.76 Da        Isoelectric Point: 5.0132

>NTDB_id=940203 V6T01_RS09290 WP_037600082.1 1999449..2001419(-) (amiA) [Streptococcus salivarius strain KSS1]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGIKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGEFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGVNIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPSYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVQKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDVVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940203 V6T01_RS09290 WP_037600082.1 1999449..2001419(-) (amiA) [Streptococcus salivarius strain KSS1]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ATATGACGACAGCCGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATACGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACCTATACTTACAAGATTCGTAAGGGTATCAAATGGTACACTTCAGACGG
CGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTGACAGGACTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACGCTTAGTCAACCAGAACCTTATTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGGAGAATTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGATCCGACTTCTATTCTCTATA
ACGGTCCATACCTTCTTAAATCTTTGACAACGAAATCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTACTTTGATACAGTTAAATTGACTTATGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACAGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGTTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTGTTAATATCGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAAGATTTCGGAACTATGGTAATGGATCAATTACCAAGCTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAATCAAGTGCAGTCACTTA
AACAATCTATTGAATCCGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAT
ATTACCTACTCTGCTTCAAATGCAGCTGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAATGG
TGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCATATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATGTTGTAACTAAGAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCTAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.97

100

0.7
  amiA3 Streptococcus thermophilus LMD-9

68.493

100

0.686
  amiA3 Streptococcus thermophilus LMG 18311

67.732

100

0.678