Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V6T01_RS09320 Genome accession   NZ_CP145856
Coordinates   2004855..2006216 (-) Length   453 a.a.
NCBI ID   WP_410541529.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1999855..2011216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS09295 (V6T01_09270) rplA 2001601..2002290 (-) 690 WP_037598508.1 50S ribosomal protein L1 -
  V6T01_RS09300 (V6T01_09275) rplK 2002390..2002815 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6T01_RS09305 (V6T01_09280) - 2002987..2003340 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  V6T01_RS09310 (V6T01_09285) - 2003435..2003932 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  V6T01_RS09315 (V6T01_09290) - 2004083..2004778 (-) 696 WP_002885783.1 TIGR00266 family protein -
  V6T01_RS09320 (V6T01_09295) radA 2004855..2006216 (-) 1362 WP_410541529.1 DNA repair protein RadA Machinery gene
  V6T01_RS09325 (V6T01_09300) - 2006213..2006680 (-) 468 WP_073689927.1 isochorismatase family protein -
  V6T01_RS09330 (V6T01_09305) - 2006690..2007136 (-) 447 WP_060971569.1 dUTP diphosphatase -
  V6T01_RS09335 (V6T01_09310) - 2007343..2007945 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  V6T01_RS09340 (V6T01_09315) - 2007964..2009214 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  V6T01_RS09345 (V6T01_09320) - 2009331..2010122 (+) 792 WP_037600086.1 formate/nitrite transporter family protein -
  V6T01_RS09350 (V6T01_09325) - 2010131..2010691 (+) 561 WP_073686086.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49435.81 Da        Isoelectric Point: 6.6528

>NTDB_id=940204 V6T01_RS09320 WP_410541529.1 2004855..2006216(-) (radA) [Streptococcus salivarius strain KSS1]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAGKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=940204 V6T01_RS09320 WP_410541529.1 2004855..2006216(-) (radA) [Streptococcus salivarius strain KSS1]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAAGAAGAGGTTGAGGTGCAGGAGGTAAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CTAAACCAACTAAATTAAAAGAAGTATCCTCAATCAATTATGCCCGCATAAAGACTGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGCAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCAACCCTCCTCTTACA
GGTGTCAACGCAACTGGCTAACAAGGGTACGGTCCTCTATGTATCTGGAGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCCGTTCGCAGTCAAGTAGAG
GCCATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCAGGACCACGTATGTTGGAACACATGGTAGATACGGTACTCTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAGGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCTACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATCTTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTCAAATTGGACGAGCCAGCTATTGACCTTGCTGTCGCCGTTGCCA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTCATAGGAGAAATTGGCTTGACCGGAGAGATACGC
CGAGTGACTCGTATTGAACAGCGTATTAATGAAGCTGGTAAATTAGGCTTCACTAAGATCTATGCTCCGAAGAATTCTCT
ACATGGTATGAAAATTCCAGAAGGTATCCAGGTCGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTCTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611