Detailed information NTG0940133

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: V6Z34_RS18930
• Genome accession: NZ_CP145817
• Coordinates: 3777231..3778376 (+)
• Length: 381 a.a.
• NCBI ID: WP_088037228.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain WH-7
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3772231..3783376

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6Z34_RS18910	-	3772706..3773422 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
V6Z34_RS18915	narK	3773520..3774710 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
V6Z34_RS18920	argS	3774844..3776514 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
V6Z34_RS18925	-	3776511..3776939 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
V6Z34_RS18930	rapF	3777231..3778376 (+)	1146	WP_088037228.1	tetratricopeptide repeat protein	Regulator
V6Z34_RS18935	-	3778360..3778479 (+)	120	WP_003151066.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
V6Z34_RS18940	-	3778677..3778880 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
V6Z34_RS18945	-	3778894..3779097 (+)	204	WP_003151062.1	hypothetical protein	-
V6Z34_RS18950	-	3779505..3779786 (+)	282	WP_014306021.1	hypothetical protein	-
V6Z34_RS18955	-	3779830..3780342 (+)	513	WP_032859656.1	stage II sporulation protein M	-
V6Z34_RS18960	-	3780933..3781151 (-)	219	WP_003151056.1	LuxR C-terminal-related transcriptional regulator	-
V6Z34_RS18965	speB	3781321..3782193 (-)	873	WP_003151054.1	agmatinase	-
V6Z34_RS18970	speE	3782253..3783083 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45325.46 Da
• Isoelectric Point: 4.9264

>NTDB_id=940133 V6Z34_RS18930 WP_088037228.1 3777231..3778376(+) (rapF) [Bacillus velezensis strain WH-7]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide

• Length: 1146 bp

>NTDB_id=940133 V6Z34_RS18930 WP_088037228.1 3777231..3778376(+) (rapF) [Bacillus velezensis strain WH-7]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (223-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	74.541	100	0.745
rapC	Bacillus subtilis subsp. subtilis str. 168	53.158	99.738	0.53