Detailed information NTG0939871

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: V6Z53_RS28850
• Genome accession: NZ_CP145732
• Coordinates: 6293011..6294342 (+)
• Length: 443 a.a.
• NCBI ID: WP_338583129.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MAG733B
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6288011..6299342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6Z53_RS28825 (V6Z53_28825)	pgeF	6288200..6288925 (-)	726	WP_338583121.1	peptidoglycan editing factor PgeF	-
V6Z53_RS28830 (V6Z53_28830)	rluD	6288922..6289884 (-)	963	WP_047533394.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
V6Z53_RS28835 (V6Z53_28835)	-	6290036..6291058 (+)	1023	WP_338583123.1	outer membrane protein assembly factor BamD	-
V6Z53_RS28840 (V6Z53_28840)	-	6291196..6291429 (+)	234	WP_338583125.1	PP0621 family protein	-
V6Z53_RS28845 (V6Z53_28845)	pilS	6291419..6293008 (+)	1590	WP_338583127.1	ATP-binding protein	Regulator
V6Z53_RS28850 (V6Z53_28850)	pilR	6293011..6294342 (+)	1332	WP_338583129.1	sigma-54 dependent transcriptional regulator	Regulator
V6Z53_RS28855 (V6Z53_28855)	thiO	6294473..6295573 (-)	1101	WP_338583131.1	glycine oxidase ThiO	-
V6Z53_RS28860 (V6Z53_28860)	-	6295631..6296032 (-)	402	WP_338583132.1	type IV pilin protein	-
V6Z53_RS28865 (V6Z53_28865)	-	6296047..6299142 (-)	3096	WP_338583133.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 49433.78 Da
• Isoelectric Point: 6.5954

>NTDB_id=939871 V6Z53_RS28850 WP_338583129.1 6293011..6294342(+) (pilR) [Pseudomonas sp. MAG733B]
MGPRQKVLIVDDEPDIRELLEITLGRMKLDTYSARNAGEALALLKRETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVA
MITAYGNVDTAINALKAGAFDFLSKPVDLARLRELVTSALLLPVPGGGLDRRLLGDSLPMRNLRKQIDKLARSQAPVYIS
GESGSGKELVARLIHDRGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLP
MQVKLLRAIQEKAVRSVGGQQEEVVDVRILCATHKDLGAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEPLAGHVLK
RLAADTGQPEAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCHPEGGVPDLTQIDNLEAYL
ENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide

• Length: 1332 bp

>NTDB_id=939871 V6Z53_RS28850 WP_338583129.1 6293011..6294342(+) (pilR) [Pseudomonas sp. MAG733B]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGATACATACAGTGCGCGCAACGCCGGCGAGGCCCTGGCCCTGCTCAAGCGCGAAACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGATGGCACCGGCCTTGAGCTGGTGCAACACATCCAGCAACGTTACCCGCAAGTTCCGGTGGCG
ATGATCACCGCCTATGGCAATGTCGACACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGAGCAAACCGGT
GGACCTCGCCCGCCTGCGGGAACTGGTCACCAGCGCCCTGCTCCTGCCCGTCCCCGGCGGCGGCCTTGATCGGCGCTTGC
TCGGCGACTCATTGCCCATGCGCAATTTGCGCAAGCAGATCGACAAACTGGCGCGCAGCCAGGCGCCGGTGTACATCAGC
GGCGAATCCGGTAGCGGCAAGGAACTGGTCGCGCGCCTGATCCACGATCGGGGGCCTCGCGCCAATCAACCCTTTGTTCC
AGTCAACTGCGGAGCGATCCCGTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCATGGCGGCACGCTGTTCCTCGACGAAGTGGCTGACTTGCCGTTGCCG
ATGCAGGTCAAATTGCTACGGGCCATTCAGGAGAAAGCCGTACGCAGCGTCGGCGGGCAACAGGAAGAGGTGGTCGACGT
ACGTATTCTTTGCGCGACTCACAAAGACCTCGGCGCCGAAGTCGCTGCCGAACGTTTTCGTCAGGACTTGTACTATCGCT
TGAACGTGATCGAGCTGCGGGTTCCGCCGCTACGCGAACGTCGAGACGATATCGAACCGTTGGCCGGCCATGTGCTCAAG
CGCCTGGCTGCCGACACCGGCCAGCCGGAAGCAAAGCTTCACCCGCAAGCACTCGATGCGCTGAAAAGTTACCGCTTCCC
CGGAAACGTCCGGGAACTGGAGAACATGCTCGAACGCGCACACACGCTTTGCGAAAACAAACAGATTGAAGCGGGCGACC
TGCGACTGGCCGAAGGCAACTGTCATCCGGAAGGAGGCGTGCCGGATCTGACGCAGATCGACAATCTGGAAGCGTACCTG
GAAAACGTCGAACGCCAGCTTCTTCTTCAAGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGTTGAA
TCTTTCATTCAGGTCGATGCGGTATCGGCTGAAGAAATTCGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (400-440)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.652	100	0.777
pilR	Acinetobacter baumannii strain A118	49.891	100	0.517
luxO	Vibrio cholerae strain A1552	36.099	100	0.363