Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   V6Z53_RS28845 Genome accession   NZ_CP145732
Coordinates   6291419..6293008 (+) Length   529 a.a.
NCBI ID   WP_338583127.1    Uniprot ID   -
Organism   Pseudomonas sp. MAG733B     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6286419..6298008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z53_RS28825 (V6Z53_28825) pgeF 6288200..6288925 (-) 726 WP_338583121.1 peptidoglycan editing factor PgeF -
  V6Z53_RS28830 (V6Z53_28830) rluD 6288922..6289884 (-) 963 WP_047533394.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6Z53_RS28835 (V6Z53_28835) - 6290036..6291058 (+) 1023 WP_338583123.1 outer membrane protein assembly factor BamD -
  V6Z53_RS28840 (V6Z53_28840) - 6291196..6291429 (+) 234 WP_338583125.1 PP0621 family protein -
  V6Z53_RS28845 (V6Z53_28845) pilS 6291419..6293008 (+) 1590 WP_338583127.1 ATP-binding protein Regulator
  V6Z53_RS28850 (V6Z53_28850) pilR 6293011..6294342 (+) 1332 WP_338583129.1 sigma-54 dependent transcriptional regulator Regulator
  V6Z53_RS28855 (V6Z53_28855) thiO 6294473..6295573 (-) 1101 WP_338583131.1 glycine oxidase ThiO -
  V6Z53_RS28860 (V6Z53_28860) - 6295631..6296032 (-) 402 WP_338583132.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58654.43 Da        Isoelectric Point: 6.8852

>NTDB_id=939870 V6Z53_RS28845 WP_338583127.1 6291419..6293008(+) (pilS) [Pseudomonas sp. MAG733B]
MIAEASSHSDKQAQRLLRLYHLYRLSVGIILVLLISSNMDNRLLTSANDDLLRSGSWLYLVLNILLVVFFENTRHPAQLF
SLALLDVLLLCGLFFAGGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVGAIGIVGSSFLLSVSHRANPNDYLQVGTLG
ALCFAAALLVQGLVRRLEVSETLVEQKASEVVGLETLNALILQRMRTGILVLDEQRRVQLANHSALTLLSCDRLEGQLID
DHLPALVDRLNLWLSNPTLRPQSLKIASSGVELQPSFIALDPSPQHQTLIFLEDLAHIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNSADQRLTQVIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLQQFVTETREGATER
QQIHLHIAAGDFKTLMDPNQLNQILDNLIRNGWRHSAQNHDQAQVWLELFIDSDSQLPILEILDDGPGVAADHQAQLFEP
FFTTSHQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=939870 V6Z53_RS28845 WP_338583127.1 6291419..6293008(+) (pilS) [Pseudomonas sp. MAG733B]
GTGATCGCTGAGGCGTCCAGTCACAGCGACAAACAGGCCCAGCGACTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGCATCATCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGGTTGCTGACCTCGGCCAATGACGACCTGCTGCGCT
CTGGCAGCTGGTTGTACCTGGTGCTGAACATTTTGCTGGTGGTGTTCTTCGAGAACACCCGCCATCCTGCGCAACTGTTC
AGCCTGGCGCTGCTCGACGTACTGCTGCTGTGCGGCCTGTTCTTCGCTGGCGGCGGCGTGGCCAGCGCCATTGGCAACTT
GCTGATCGTTTCGGTGGCCATCAGCAATACGTTGCTGCGAAGGCGTATCGGCCTGTTGATTGCCGCCGTCGGGGCGATCG
GCATTGTCGGTTCGAGCTTCCTGTTGAGCGTCAGCCATCGCGCCAATCCCAATGACTATTTACAGGTCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCAGCCCTGCTGGTGCAAGGCCTGGTCCGACGGCTGGAAGTCAGCGAAACGCTGGTGGAGCAGAA
GGCCAGTGAAGTCGTCGGCCTGGAAACGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACG
AGCAGCGGCGCGTGCAATTGGCCAACCACAGTGCCCTGACGCTGCTCAGCTGTGACCGCCTCGAAGGCCAACTGATCGAC
GACCACCTCCCGGCACTTGTCGATCGCCTGAACCTGTGGCTCAGCAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCGC
CAGCAGCGGCGTTGAGCTACAGCCCAGTTTCATAGCATTGGACCCAAGCCCGCAGCATCAGACGCTGATCTTTCTCGAAG
ATCTCGCCCACATCGCGCAACAGGCCCAACAACTGAAACTCGCCGCCCTCGGGCGCCTGACCGCCGGCATCGCCCATGAA
ATTCGCAATCCACTGGGCGCCATCAGTCATGCCGCACAGCTATTGCGCGAATCTGAGGAACTCAACAGCGCGGATCAACG
TCTGACCCAGGTCATTCAAGATCACTCCCAGCGCATGAATCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTGCCGCAACGGTTGGACCTGAAGCCGTGGCTGCAACAGTTCGTCACTGAAACCCGCGAGGGCGCGACCGAGCGC
CAGCAGATTCATCTGCACATCGCTGCGGGAGACTTCAAGACCTTGATGGACCCGAACCAGTTGAACCAGATTCTCGACAA
CCTGATTCGCAACGGCTGGCGCCACAGCGCCCAGAACCACGACCAGGCACAGGTATGGCTTGAGTTGTTCATCGACTCCG
ACAGCCAGTTGCCAATCCTTGAAATCCTCGACGACGGCCCCGGTGTGGCCGCGGACCATCAGGCGCAGCTGTTCGAGCCT
TTCTTCACCACCAGCCACCAAGGCACTGGCCTGGGGCTGTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601