Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   V6W80_RS19525 Genome accession   NZ_CP145723
Coordinates   4109295..4110635 (+) Length   446 a.a.
NCBI ID   WP_338545140.1    Uniprot ID   -
Organism   Pseudomonas benzopyrenica strain MLY92     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4104295..4115635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6W80_RS19505 (V6W80_19505) - 4104637..4105662 (+) 1026 WP_285386476.1 outer membrane protein assembly factor BamD -
  V6W80_RS19510 (V6W80_19510) - 4105730..4107352 (-) 1623 WP_338545139.1 NAD+ synthase -
  V6W80_RS19515 (V6W80_19515) - 4107486..4107734 (+) 249 WP_017640839.1 PP0621 family protein -
  V6W80_RS19520 (V6W80_19520) pilS 4107718..4109292 (+) 1575 WP_017640840.1 ATP-binding protein Regulator
  V6W80_RS19525 (V6W80_19525) pilR 4109295..4110635 (+) 1341 WP_338545140.1 sigma-54 dependent transcriptional regulator Regulator
  V6W80_RS19530 (V6W80_19530) thiO 4110636..4111739 (-) 1104 WP_338545141.1 glycine oxidase ThiO -
  V6W80_RS19535 (V6W80_19535) - 4111837..4112331 (+) 495 WP_338545142.1 GspH/FimT family pseudopilin -
  V6W80_RS19540 (V6W80_19540) - 4112453..4112965 (+) 513 WP_338545144.1 GspH/FimT family pseudopilin -
  V6W80_RS19545 (V6W80_19545) pilV 4112962..4113489 (+) 528 WP_338545146.1 type IV pilus modification protein PilV -
  V6W80_RS19550 (V6W80_19550) - 4113493..4114269 (+) 777 WP_338545148.1 PilW family protein -
  V6W80_RS19555 (V6W80_19555) - 4114266..4114814 (+) 549 WP_338545149.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48955.24 Da        Isoelectric Point: 5.8417

>NTDB_id=939746 V6W80_RS19525 WP_338545140.1 4109295..4110635(+) (pilR) [Pseudomonas benzopyrenica strain MLY92]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNIADARAILERESFDLCLTDMRLPDGSGLDLIQFIQQRLPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGPTPAVAGASETQLLGESPPMRALRGQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQEISLDVRILSATHRDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGVLANH
MLERLARDSGLAPATLGEDALARLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADAPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=939746 V6W80_RS19525 WP_338545140.1 4109295..4110635(+) (pilR) [Pseudomonas benzopyrenica strain MLY92]
ATGGCCCGACAGAAAGTCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGGGCGGATGAA
ACTCGACACCGCCAGCGCCAAGAACATCGCCGACGCCCGGGCCATCCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGCCTGCCCGACGGTTCGGGCCTCGACCTCATCCAGTTCATCCAGCAGCGGCTCCCGCAACTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGAAACCGCGGTCCAGGCACTCAAGGCCGGCGCCTTCGACTACCTGACCAAGCCGGTGGA
TCTGCCGCGCCTGCGCGAGCTGGTGGGCACCGCCCTGCGCCTGTCCGGGCCAACCCCGGCAGTAGCCGGTGCCAGTGAAA
CCCAACTGCTCGGCGAGTCGCCCCCCATGCGCGCCCTGCGCGGCCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTC
TACATCAGTGGCGAATCGGGCAGCGGCAAGGAGCGCGTAGCGCGCCTGATTCACGAGCAAGGCCCCCGTGCCGGACGGCC
CTTCGTCCCGGTCAACTGTGGCGCCATCCCCTCGGAACTGGTGGAAAGCGAATTCTTTGGCCACCGCAAGGGCAGCTTCA
CCGGCGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTCCTCGACGAGGTGGCTGACCTG
CCGCTACCGATGCAGGTCAAGCTCTTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCGGTAGGCAGCCAGCAGGAGATCAG
CCTGGACGTGCGCATCCTCAGCGCCACCCACCGGGATCTCGCCGCCGAGGTCGCCGCCGGCACCTTCCGCCAGGATCTCT
ACTATCGCCTCAACGTCATCGAATTGCAGGTACCGGCCCTGCGCGAGCGCCGTGAAGACATCGGCGTCCTGGCCAATCAC
ATGCTCGAACGCCTGGCGCGGGACTCAGGCCTCGCCCCGGCCACGCTGGGCGAAGATGCCCTGGCCAGGCTCAAAAGCTA
CCGCTTTCCCGGCAACGTGCGGGAACTGGAAAACATGCTGGAGCGGGCCTACACCCTTTGCGAAGGCGATGTCATCCGCC
CGGCCGACCTGCGTCTGGCCGACGCCCCGGCGGCCACCGCCACCGGCGAAGCCAGCCTGGCCAACATCGCCAACCTCGAA
GACCACCTGGAGTCCATCGAGCGCCAGCTGATCATGCAGGCGCTCGAAGAGACCCGCTGGAACCGCACCGCCGCCGCGGA
ACGCCTGGGTCTATCCTTCCGTTCGATGCGCTACCGCCTGAAAAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.269

100

0.803
  pilR Acinetobacter baumannii strain A118

49.571

100

0.518
  luxO Vibrio cholerae strain A1552

38.009

99.103

0.377