Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   V6W80_RS19520 Genome accession   NZ_CP145723
Coordinates   4107718..4109292 (+) Length   524 a.a.
NCBI ID   WP_017640840.1    Uniprot ID   A0A178LFV9
Organism   Pseudomonas benzopyrenica strain MLY92     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4102718..4114292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6W80_RS19495 (V6W80_19495) pgeF 4102761..4103492 (-) 732 WP_338545138.1 peptidoglycan editing factor PgeF -
  V6W80_RS19500 (V6W80_19500) rluD 4103489..4104448 (-) 960 WP_017640836.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6W80_RS19505 (V6W80_19505) - 4104637..4105662 (+) 1026 WP_285386476.1 outer membrane protein assembly factor BamD -
  V6W80_RS19510 (V6W80_19510) - 4105730..4107352 (-) 1623 WP_338545139.1 NAD+ synthase -
  V6W80_RS19515 (V6W80_19515) - 4107486..4107734 (+) 249 WP_017640839.1 PP0621 family protein -
  V6W80_RS19520 (V6W80_19520) pilS 4107718..4109292 (+) 1575 WP_017640840.1 ATP-binding protein Regulator
  V6W80_RS19525 (V6W80_19525) pilR 4109295..4110635 (+) 1341 WP_338545140.1 sigma-54 dependent transcriptional regulator Regulator
  V6W80_RS19530 (V6W80_19530) thiO 4110636..4111739 (-) 1104 WP_338545141.1 glycine oxidase ThiO -
  V6W80_RS19535 (V6W80_19535) - 4111837..4112331 (+) 495 WP_338545142.1 GspH/FimT family pseudopilin -
  V6W80_RS19540 (V6W80_19540) - 4112453..4112965 (+) 513 WP_338545144.1 GspH/FimT family pseudopilin -
  V6W80_RS19545 (V6W80_19545) pilV 4112962..4113489 (+) 528 WP_338545146.1 type IV pilus modification protein PilV -
  V6W80_RS19550 (V6W80_19550) - 4113493..4114269 (+) 777 WP_338545148.1 PilW family protein -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57369.11 Da        Isoelectric Point: 8.1876

>NTDB_id=939745 V6W80_RS19520 WP_017640840.1 4107718..4109292(+) (pilS) [Pseudomonas benzopyrenica strain MLY92]
MSTATDPGILRADAVLRLYHLYRIVIGLALVVLISSDLDQHWLRTVDGLLFRQASWAYLATNVVLAVGHRLLRGRAFALA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATGYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLANPAARRLLGVDDEATITPLTLG
LAQRLEEWERNPSIRPTPWRAHANGPLLQPSFARLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELTTPDRRLAQIIQDQSRRMNRVVENVLQLSRRRQAAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEAGTLQTHMDPHQLGQILTNLVQNGLRYSCQKHGTGQVWLSTYRDPESDLPILEVVDDGPGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=939745 V6W80_RS19520 WP_017640840.1 4107718..4109292(+) (pilS) [Pseudomonas benzopyrenica strain MLY92]
ATGAGCACCGCGACTGATCCAGGCATCCTGAGAGCCGACGCGGTCCTGCGGCTCTATCATCTCTATCGCATCGTCATCGG
TCTGGCGCTGGTGGTGCTGATTTCCAGCGATCTGGATCAGCACTGGCTGCGCACCGTCGACGGCCTGCTGTTCCGTCAGG
CCAGCTGGGCCTATCTGGCCACCAACGTAGTGCTCGCGGTCGGCCATCGGCTGCTGCGCGGTCGCGCCTTCGCCCTGGCA
CTGATCGATATCCTCGCCCTGGGCGGCCTGTTCTTCCTGGCCGGCGGCATCGCCAGCGGCATGGGCAGTCTGCTGGTGGT
GACCGTCGGGGTCTCCAACGTCCTGATCCGCGGACGCCGCGGCCTGCTGATCGCTGCCCTGGCCGCCATCGCCCTGCTGC
TGGCGACCGGCTACCTGGACTTGCGCCGTGGCGACAGCGGCAGCGGCTATGTGCAGGCGGCAGGTCTGGGCACCCTTTGT
TTCGCCACGGCACTGCTGGTACAGGGCCTGGTCCGGCGGCTGCTGGACAGCCAGGCCCTGGCCGAAACCCGCGCCACTGC
GGTGGCCGAATTGGAAGCCCTCAATGCCCTGATCCTCGAACGCATGCGTACCGGCATCCTGGTGTTCGATGCCGAGTACC
AGGTGCTGCTGGCCAATCCAGCAGCCCGGCGCCTGCTCGGGGTGGACGACGAGGCCACCATCACGCCCCTGACCCTGGGC
CTCGCCCAGCGGCTGGAGGAATGGGAGCGCAATCCCAGCATCCGTCCCACGCCCTGGCGCGCCCATGCCAACGGCCCGCT
GCTGCAACCCAGCTTCGCCCGGCTGCAGCAAGGTGAAGGCGAACGGGTACTCACCTTTCTCGAAGACGTCTCGCGCATCG
CCCAGCAGGCCCAGCAACTCAAGCTCGCCTCCCTTGGTCGTCTCACCGCCGGCATCGCCCACGAGATCCGCAACCCGCTG
GGGGCCATCAGTCACGCCGCGCAACTGCTGCAGGAATCCGAAGAACTGACTACACCGGATCGGCGCCTGGCGCAGATCAT
CCAGGACCAGTCACGGCGAATGAATCGGGTGGTGGAAAACGTCCTGCAGCTGTCGCGCCGACGCCAGGCCGCGCCGCAGC
TGATCGATCTGCGCTATTGGGCGCACCGCTTCGCCGGGGAGTTGCGCCCTACCCTGCCCGCCGGCCAGACGCTGCACGTC
AAGACCGAAGCCGGTACCCTGCAGACCCACATGGACCCCCACCAGCTGGGCCAGATCCTGACCAACCTGGTACAGAACGG
CCTGCGCTACAGCTGCCAGAAACACGGCACCGGCCAGGTCTGGCTCAGCACCTACCGCGACCCGGAAAGCGATCTGCCCA
TCCTCGAGGTGGTCGATGACGGCCCAGGCGTCGCCGCCGAACAACTCGACCACCTGTTCGAACCCTTCTTCACCACCGAG
AACAAGGGGACCGGGCTGGGCCTGTACATCTCCCGTGAGCTTTGCGAGAGCAACCAGGCCAGACTTGGCTATCATCCTTT
GGCGAACGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(304-368)

PAS domain (PAS_8)

(198-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178LFV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.735

98.664

0.599