Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORY85_RS00870 Genome accession   NZ_CP145606
Coordinates   166305..166817 (-) Length   170 a.a.
NCBI ID   WP_274572165.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 161305..171817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS00845 (ORY85_00845) speB 161639..162607 (-) 969 WP_274572160.1 agmatinase -
  ORY85_RS00850 (ORY85_00850) - 162681..163154 (-) 474 WP_274572161.1 GNAT family N-acetyltransferase -
  ORY85_RS00855 (ORY85_00855) - 163168..163821 (-) 654 WP_274572162.1 DedA family protein -
  ORY85_RS00860 (ORY85_00860) glmM 163885..165222 (-) 1338 WP_274572163.1 phosphoglucosamine mutase -
  ORY85_RS00865 (ORY85_00865) folP 165223..166098 (-) 876 WP_274572164.1 dihydropteroate synthase -
  ORY85_RS00870 (ORY85_00870) ssb 166305..166817 (-) 513 WP_274572165.1 single-stranded DNA-binding protein Machinery gene
  ORY85_RS00875 (ORY85_00875) - 166824..168200 (-) 1377 WP_274572166.1 MFS transporter -
  ORY85_RS00880 (ORY85_00880) greA 168428..168904 (+) 477 WP_274572167.1 transcription elongation factor GreA -
  ORY85_RS00885 (ORY85_00885) - 169065..169514 (+) 450 WP_274572168.1 DUF4149 domain-containing protein -
  ORY85_RS00890 (ORY85_00890) - 169675..170277 (+) 603 WP_274572170.1 inner membrane-spanning protein YciB -
  ORY85_RS00895 (ORY85_00895) argJ 170493..171713 (-) 1221 WP_274572171.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19075.11 Da        Isoelectric Point: 5.3108

>NTDB_id=938999 ORY85_RS00870 WP_274572165.1 166305..166817(-) (ssb) [Neisseria leonii strain 3986]
MSLNKVMLIGNLGRDPEVRYMPNGDPVCNFSIATSESWNDRQTGQRQERTEWHNITLYRRLAEVAGQYLKKGSQVYIEGR
IQSRKYTGKDGIERTAYDIIGNEMQMLGGRQNSGSSAPYDDDQSAYAPQQNSRPAAPPQNYNSEPPAAPRRQAPAAPVKP
VEDIDEDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=938999 ORY85_RS00870 WP_274572165.1 166305..166817(-) (ssb) [Neisseria leonii strain 3986]
ATGTCATTGAACAAAGTCATGCTGATAGGCAATCTCGGCCGCGATCCCGAAGTACGCTATATGCCCAACGGCGATCCGGT
CTGCAATTTTTCCATCGCCACCAGTGAAAGCTGGAACGACCGCCAGACCGGCCAGCGTCAGGAACGCACCGAATGGCACA
ATATCACGCTCTACCGCCGTCTGGCCGAAGTCGCCGGACAATATCTGAAAAAAGGCAGCCAAGTCTATATCGAAGGCCGT
ATCCAGAGCCGCAAATACACCGGTAAAGACGGCATCGAACGTACCGCCTACGACATCATCGGCAACGAAATGCAGATGCT
GGGCGGCCGCCAGAACAGCGGCAGCAGCGCCCCTTATGATGATGACCAGTCCGCTTACGCCCCACAGCAGAACAGCCGTC
CGGCCGCACCGCCGCAAAACTACAACAGCGAACCGCCGGCCGCACCGCGCCGCCAAGCCCCTGCCGCACCGGTGAAACCC
GTCGAAGACATCGACGAAGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

69.886

100

0.724
  ssb Neisseria meningitidis MC58

68.182

100

0.706
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.494
  ssb Vibrio cholerae strain A1552

46.821

100

0.476