Detailed information NTG0938948

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V5F87_RS11850
• Genome accession: NZ_CP145595
• Coordinates: 2418751..2419260 (-)
• Length: 169 a.a.
• NCBI ID: WP_023349922.1
• Uniprot ID: A0A7X9WHU6
• Organism: Staphylococcus capitis strain kcgeb_sa
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2413751..2424260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V5F87_RS11810 (V5F87_11810)	-	2414688..2414942 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
V5F87_RS11815 (V5F87_11815)	-	2415244..2415504 (+)	261	WP_002434577.1	hypothetical protein	-
V5F87_RS11820 (V5F87_11820)	-	2415508..2416257 (-)	750	WP_023349917.1	amidohydrolase family protein	-
V5F87_RS11825 (V5F87_11825)	-	2416414..2416671 (+)	258	WP_002434565.1	helix-turn-helix transcriptional regulator	-
V5F87_RS11830 (V5F87_11830)	-	2416742..2417095 (-)	354	WP_023349918.1	hypothetical protein	-
V5F87_RS11835 (V5F87_11835)	-	2417179..2417742 (-)	564	WP_037560395.1	DUF5067 domain-containing protein	-
V5F87_RS11840 (V5F87_11840)	-	2417879..2418133 (-)	255	WP_023349920.1	hypothetical protein	-
V5F87_RS11845 (V5F87_11845)	rpsR	2418462..2418704 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
V5F87_RS11850 (V5F87_11850)	ssbA	2418751..2419260 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
V5F87_RS11855 (V5F87_11855)	rpsF	2419282..2419578 (-)	297	WP_002445146.1	30S ribosomal protein S6	-
V5F87_RS11860 (V5F87_11860)	-	2419711..2419857 (-)	147	Protein_2281	recombinase family protein	-
V5F87_RS11865 (V5F87_11865)	-	2419991..2420737 (-)	747	WP_023349924.1	HAD family hydrolase	-
V5F87_RS11870 (V5F87_11870)	-	2420741..2421157 (-)	417	WP_023349925.1	NUDIX domain-containing protein	-
V5F87_RS11875 (V5F87_11875)	-	2421154..2422044 (-)	891	WP_023349926.1	DMT family transporter	-
V5F87_RS11880 (V5F87_11880)	-	2422044..2422427 (-)	384	WP_037550912.1	NUDIX domain-containing protein	-
V5F87_RS11885 (V5F87_11885)	-	2422440..2423117 (-)	678	WP_023349928.1	hypothetical protein	-
V5F87_RS11890 (V5F87_11890)	-	2423121..2424260 (-)	1140	WP_226859625.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18672.18 Da
• Isoelectric Point: 4.5778

>NTDB_id=938948 V5F87_RS11850 WP_023349922.1 2418751..2419260(-) (ssbA) [Staphylococcus capitis strain kcgeb_sa]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=938948 V5F87_RS11850 WP_023349922.1 2418751..2419260(-) (ssbA) [Staphylococcus capitis strain kcgeb_sa]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A7X9WHU6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361