Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V5F87_RS09100 Genome accession   NZ_CP145595
Coordinates   1869690..1870118 (-) Length   142 a.a.
NCBI ID   WP_338499895.1    Uniprot ID   -
Organism   Staphylococcus capitis strain kcgeb_sa     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1864690..1875118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F87_RS09045 (V5F87_09045) - 1864851..1865033 (-) 183 WP_193625992.1 hypothetical protein -
  V5F87_RS09050 (V5F87_09050) - 1865038..1865418 (-) 381 WP_338499877.1 SA1788 family PVL leukocidin-associated protein -
  V5F87_RS09055 (V5F87_09055) - 1865421..1865606 (-) 186 WP_338499878.1 hypothetical protein -
  V5F87_RS09060 (V5F87_09060) - 1865596..1866003 (-) 408 WP_234752166.1 DUF1064 domain-containing protein -
  V5F87_RS09065 (V5F87_09065) - 1866012..1866257 (-) 246 WP_338499882.1 DUF3269 family protein -
  V5F87_RS09070 (V5F87_09070) - 1866260..1866415 (-) 156 WP_168995397.1 hypothetical protein -
  V5F87_RS09075 (V5F87_09075) - 1866409..1867179 (-) 771 WP_325957245.1 ATP-binding protein -
  V5F87_RS09080 (V5F87_09080) - 1867192..1867935 (-) 744 WP_338499888.1 replication protein -
  V5F87_RS09085 (V5F87_09085) - 1867928..1868464 (-) 537 WP_338499889.1 hypothetical protein -
  V5F87_RS09090 (V5F87_09090) - 1868454..1869128 (-) 675 WP_338499891.1 putative HNHc nuclease -
  V5F87_RS09095 (V5F87_09095) - 1869129..1869677 (-) 549 WP_285109377.1 NUMOD4 motif-containing HNH endonuclease -
  V5F87_RS09100 (V5F87_09100) ssbA 1869690..1870118 (-) 429 WP_338499895.1 single-stranded DNA-binding protein Machinery gene
  V5F87_RS09105 (V5F87_09105) - 1870115..1870753 (-) 639 WP_338499898.1 ERF family protein -
  V5F87_RS09110 (V5F87_09110) - 1870746..1870967 (-) 222 WP_141489376.1 DUF2483 family protein -
  V5F87_RS09115 (V5F87_09115) - 1870933..1871215 (-) 283 Protein_1760 chordopoxvirus fusion protein -
  V5F87_RS09120 (V5F87_09120) - 1871237..1871449 (-) 213 WP_141489380.1 hypothetical protein -
  V5F87_RS09125 (V5F87_09125) - 1871589..1872053 (+) 465 WP_141489381.1 hypothetical protein -
  V5F87_RS09130 (V5F87_09130) - 1872137..1872301 (-) 165 WP_329503225.1 hypothetical protein -
  V5F87_RS09135 (V5F87_09135) - 1872315..1872527 (-) 213 WP_002436465.1 DUF771 domain-containing protein -
  V5F87_RS09140 (V5F87_09140) - 1872531..1872698 (-) 168 WP_338499904.1 hypothetical protein -
  V5F87_RS09145 (V5F87_09145) - 1872800..1872994 (-) 195 WP_141489384.1 hypothetical protein -
  V5F87_RS09150 (V5F87_09150) - 1873074..1873841 (-) 768 WP_338499907.1 DUF6551 family protein -
  V5F87_RS09155 (V5F87_09155) - 1873841..1874704 (-) 864 WP_338499909.1 ParB N-terminal domain-containing protein -
  V5F87_RS09160 (V5F87_09160) - 1874720..1874935 (-) 216 WP_237628625.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15924.53 Da        Isoelectric Point: 5.2263

>NTDB_id=938942 V5F87_RS09100 WP_338499895.1 1869690..1870118(-) (ssbA) [Staphylococcus capitis strain kcgeb_sa]
MINRVVLVGRLTKDPNFNEGDVANAKFTLAVNRPFKNKNGEQEADFINVVAFRRQAENVNNYLSKGQLAGVDGRIQTRSY
EKDGQRVFVTEVVADSVQFLEPKNSNQQNNQPQQQRRQAPAGNNPFANDNGIDDIDDSTLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=938942 V5F87_RS09100 WP_338499895.1 1869690..1870118(-) (ssbA) [Staphylococcus capitis strain kcgeb_sa]
ATGATAAACAGAGTAGTTTTAGTAGGTAGATTAACGAAAGATCCAAACTTTAATGAAGGCGATGTAGCGAATGCAAAATT
TACATTAGCAGTAAATAGACCGTTTAAAAACAAAAATGGCGAACAAGAGGCTGATTTTATAAACGTAGTAGCTTTCAGAC
GACAAGCAGAAAACGTAAATAATTATCTATCAAAAGGACAACTTGCCGGAGTAGACGGTCGTATTCAGACACGCAGCTAT
GAAAAAGATGGCCAACGTGTATTCGTAACGGAAGTTGTGGCTGACAGCGTTCAATTTTTAGAACCAAAGAATAGCAACCA
ACAAAACAACCAACCTCAACAACAACGAAGACAAGCACCAGCAGGAAATAATCCTTTTGCAAATGATAATGGTATCGATG
ATATAGACGATTCTACACTTCCTTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

48.824

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

74.648

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

82.394

0.366