Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   LBA42_RS07210 Genome accession   NZ_CP145437
Coordinates   1422822..1423484 (+) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417822..1428484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS07180 (LBA42_07180) tnpB 1418381..1418596 (+) 216 WP_000376909.1 IS66 family insertion sequence element accessory protein TnpB -
  LBA42_RS07185 (LBA42_07185) - 1418737..1419045 (-) 309 Protein_1418 transposase -
  LBA42_RS07190 (LBA42_07190) - 1419027..1419556 (+) 530 Protein_1419 transposase -
  LBA42_RS07195 (LBA42_07195) cysK 1419631..1420551 (-) 921 WP_000029866.1 cysteine synthase A -
  LBA42_RS07200 (LBA42_07200) - 1420836..1421471 (-) 636 WP_000395738.1 YigZ family protein -
  LBA42_RS07205 (LBA42_07205) comFA/cflA 1421527..1422825 (+) 1299 WP_000867591.1 DEAD/DEAH box helicase Machinery gene
  LBA42_RS07210 (LBA42_07210) comFC/cflB 1422822..1423484 (+) 663 WP_000649971.1 ComF family protein Machinery gene
  LBA42_RS07215 (LBA42_07215) raiA 1423564..1424112 (+) 549 WP_000599107.1 ribosome-associated translation inhibitor RaiA -
  LBA42_RS07220 (LBA42_07220) - 1424248..1426221 (+) 1974 WP_000715116.1 DHH family phosphoesterase -
  LBA42_RS07225 (LBA42_07225) rplI 1426218..1426670 (+) 453 WP_000864220.1 50S ribosomal protein L9 -
  LBA42_RS07230 (LBA42_07230) dnaB 1426714..1428066 (+) 1353 WP_000852486.1 replicative DNA helicase -
  LBA42_RS07235 (LBA42_07235) - 1428068..1428334 (+) 267 WP_001278167.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=938709 LBA42_RS07210 WP_000649971.1 1422822..1423484(+) (comFC/cflB) [Streptococcus pneumoniae strain HAC 39-1996]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=938709 LBA42_RS07210 WP_000649971.1 1422822..1423484(+) (comFC/cflB) [Streptococcus pneumoniae strain HAC 39-1996]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914