Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SNR28_RS24565 Genome accession   NZ_CP145311
Coordinates   3232938..3233477 (-) Length   179 a.a.
NCBI ID   WP_375751532.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3227938..3238477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS24555 (SNR28_24525) csrD 3229161..3231152 (-) 1992 WP_375751530.1 RNase E specificity factor CsrD -
  SNR28_RS24560 (SNR28_24530) - 3231765..3232856 (+) 1092 WP_375751531.1 acyltransferase -
  SNR28_RS24565 (SNR28_24535) ssb 3232938..3233477 (-) 540 WP_375751532.1 single-stranded DNA-binding protein Machinery gene
  SNR28_RS24570 (SNR28_24540) - 3233765..3234406 (+) 642 WP_375751534.1 LuxR C-terminal-related transcriptional regulator -
  SNR28_RS24575 (SNR28_24545) galU 3234540..3235412 (+) 873 WP_375751535.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SNR28_RS24580 (SNR28_24550) uvrA 3235550..3238390 (+) 2841 WP_375751536.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19939.99 Da        Isoelectric Point: 4.9269

>NTDB_id=938421 SNR28_RS24565 WP_375751532.1 3232938..3233477(-) (ssb) [Vibrio sp. HN007]
MASRGVNKVILMGNLGGDPEVRYASNGNAIANITIATSETWRDKASGEQREKTEWHRVVLFGKTAEIAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRYSTEVVVQWPTGQMQLLGSRQQGQGQGAPAMGGQQQQGGWGQPQQPVQQQPMQQQPAQQQAPQ
QAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=938421 SNR28_RS24565 WP_375751532.1 3232938..3233477(-) (ssb) [Vibrio sp. HN007]
ATGGCAAGCCGTGGAGTAAACAAAGTAATCCTGATGGGAAACTTAGGGGGAGATCCTGAAGTTCGTTATGCATCAAATGG
TAATGCTATTGCAAACATTACAATTGCTACATCAGAGACTTGGCGTGATAAAGCATCTGGCGAACAACGCGAAAAGACAG
AGTGGCATCGTGTAGTTCTATTCGGTAAAACTGCCGAAATTGCTGGCGAGTACCTTCGTAAAGGTTCGCAAGTATATGTT
GAAGGTCAGCTTCAGACCCGTAAGTGGCAAGATCAGAATGGTCAGGATCGCTACTCAACAGAAGTAGTCGTACAGTGGCC
GACAGGTCAAATGCAGTTGCTTGGCTCTCGTCAGCAGGGTCAGGGCCAAGGGGCTCCTGCTATGGGTGGGCAGCAGCAAC
AAGGTGGCTGGGGACAACCACAGCAACCAGTTCAGCAGCAGCCTATGCAACAGCAACCAGCTCAACAACAGGCTCCTCAA
CAAGCGCAACCGCAGTACAATGAGCCTCCAATGGATTTTGATGATGACATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.503

100

0.782
  ssb Glaesserella parasuis strain SC1401

52.128

100

0.547
  ssb Neisseria gonorrhoeae MS11

44.565

100

0.458
  ssb Neisseria meningitidis MC58

44.022

100

0.453