Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   SNR28_RS16710 Genome accession   NZ_CP145311
Coordinates   1508657..1509238 (+) Length   193 a.a.
NCBI ID   WP_375753800.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503657..1514238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS16690 (SNR28_16680) panP 1503954..1505621 (-) 1668 WP_375753796.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  SNR28_RS16695 (SNR28_16685) - 1505745..1506257 (-) 513 WP_375753797.1 hypothetical protein -
  SNR28_RS16700 (SNR28_16690) - 1506416..1507321 (-) 906 WP_375753798.1 lysine exporter LysO family protein -
  SNR28_RS16705 (SNR28_16695) - 1507352..1508272 (-) 921 WP_375753799.1 HDOD domain-containing protein -
  SNR28_RS16710 (SNR28_16700) tfoX 1508657..1509238 (+) 582 WP_375753800.1 TfoX/Sxy family DNA transformation protein Regulator
  SNR28_RS16715 (SNR28_16705) - 1509432..1510460 (+) 1029 WP_375753801.1 ABC transporter permease subunit -
  SNR28_RS16720 (SNR28_16710) - 1510464..1511507 (+) 1044 WP_375753802.1 ABC transporter permease -
  SNR28_RS16725 (SNR28_16715) - 1511572..1513401 (+) 1830 WP_375753803.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22359.66 Da        Isoelectric Point: 7.2436

>NTDB_id=938407 SNR28_RS16710 WP_375753800.1 1508657..1509238(+) (tfoX) [Vibrio sp. HN007]
MIDQRFFGYLKTFGPYLKRSMFGGTGIFVEDAMYALIIEKQLFLRGGEELDDKLTSKGCKKYRHVKKQTTATVNYYDITE
LFDQNDHELEGLINRSIQLSVEFKTSQKSAENIRLRDLPNMQLTLERMVKKSGVKNVDEFISLGPEIVFRKVQDEYGKDV
DTRLLWKFAGAVDGVHWELLDSGRKKELLENCT

Nucleotide


Download         Length: 582 bp        

>NTDB_id=938407 SNR28_RS16710 WP_375753800.1 1508657..1509238(+) (tfoX) [Vibrio sp. HN007]
ATGATCGATCAACGATTTTTTGGCTACCTAAAAACTTTCGGTCCCTACCTTAAACGTTCAATGTTTGGCGGAACTGGCAT
CTTTGTCGAAGATGCAATGTACGCACTTATCATAGAAAAGCAGTTGTTTCTTCGCGGTGGTGAAGAACTCGATGATAAGC
TCACTTCAAAAGGCTGCAAAAAATATAGACACGTCAAGAAACAAACTACTGCGACCGTAAATTATTACGATATTACAGAG
TTATTTGACCAAAATGATCATGAACTTGAGGGACTTATAAACCGCTCTATTCAGCTATCGGTTGAGTTCAAAACTTCTCA
AAAGTCTGCAGAGAATATCCGGCTTCGAGATCTTCCAAACATGCAATTAACACTCGAAAGAATGGTAAAAAAATCAGGTG
TGAAAAATGTTGATGAGTTTATCTCTCTTGGGCCTGAAATTGTATTTCGTAAAGTTCAGGACGAATATGGTAAAGACGTG
GATACACGCTTGCTATGGAAGTTTGCCGGTGCCGTTGACGGAGTTCACTGGGAACTGCTGGATTCAGGAAGGAAGAAAGA
ACTGTTAGAAAACTGTACTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-191)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

62.5

99.482

0.622
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

62.5

99.482

0.622
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

62.5

99.482

0.622
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

62.5

99.482

0.622
  tfoX Vibrio cholerae strain A1552

62.5

99.482

0.622
  tfoX Vibrio campbellii strain DS40M4

58.333

99.482

0.58
  tfoX Vibrio parahaemolyticus RIMD 2210633

57.292

99.482

0.57
  tfoX Aliivibrio fischeri ES114

51.309

98.964

0.508