Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V6C74_RS11925 Genome accession   NZ_CP145263
Coordinates   2382564..2383073 (-) Length   169 a.a.
NCBI ID   WP_002434425.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain DSM 20326     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2380230..2389543 2382564..2383073 within 0


Gene organization within MGE regions


Location: 2380230..2389543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C74_RS11895 (V6C74_11850) - 2380230..2380487 (+) 258 WP_002434565.1 helix-turn-helix transcriptional regulator -
  V6C74_RS11900 (V6C74_11855) - 2380558..2380911 (-) 354 WP_002454425.1 membrane protein -
  V6C74_RS11905 (V6C74_11860) - 2380995..2381225 (-) 231 WP_002454424.1 hypothetical protein -
  V6C74_RS11910 (V6C74_11865) - 2381228..2381557 (-) 330 WP_229716971.1 hypothetical protein -
  V6C74_RS11915 (V6C74_11870) - 2381694..2381948 (-) 255 WP_002454422.1 hypothetical protein -
  V6C74_RS11920 (V6C74_11875) rpsR 2382275..2382517 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  V6C74_RS11925 (V6C74_11880) ssbA 2382564..2383073 (-) 510 WP_002434425.1 single-stranded DNA-binding protein Machinery gene
  V6C74_RS11930 (V6C74_11885) rpsF 2383095..2383391 (-) 297 WP_016898402.1 30S ribosomal protein S6 -
  V6C74_RS11935 (V6C74_11890) - 2383524..2383688 (-) 165 Protein_2274 recombinase family protein -
  V6C74_RS11940 (V6C74_11895) - 2383804..2384550 (-) 747 WP_002454420.1 HAD family hydrolase -
  V6C74_RS11945 (V6C74_11900) - 2384554..2384970 (-) 417 WP_229716969.1 NUDIX domain-containing protein -
  V6C74_RS11950 (V6C74_11905) - 2384967..2385131 (-) 165 WP_229716968.1 hypothetical protein -
  V6C74_RS11955 (V6C74_11910) - 2385290..2385859 (-) 570 WP_229716965.1 EamA family transporter -
  V6C74_RS11960 (V6C74_11915) - 2385885..2386250 (-) 366 WP_002454417.1 NUDIX domain-containing protein -
  V6C74_RS11965 (V6C74_11920) - 2386263..2386940 (-) 678 WP_002434477.1 hypothetical protein -
  V6C74_RS11970 (V6C74_11925) - 2386940..2387983 (-) 1044 WP_016898404.1 aminotransferase class V-fold PLP-dependent enzyme -
  V6C74_RS11975 (V6C74_11930) - 2388265..2388594 (+) 330 WP_029625735.1 helix-turn-helix domain-containing protein -
  V6C74_RS11980 (V6C74_11935) - 2388728..2389543 (+) 816 WP_002454414.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18688.18 Da        Isoelectric Point: 4.5778

>NTDB_id=938394 V6C74_RS11925 WP_002434425.1 2382564..2383073(-) (ssbA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=938394 V6C74_RS11925 WP_002434425.1 2382564..2383073(-) (ssbA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACTCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361