Detailed information NTG0938187

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6C47_RS11155
• Genome accession: NZ_CP145248
• Coordinates: 2299131..2299640 (-)
• Length: 169 a.a.
• NCBI ID: WP_367121169.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. urealyticus strain Sc1365669
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2294131..2304640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C47_RS11110 (V6C47_11105)	-	2295070..2295324 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
V6C47_RS11115 (V6C47_11110)	-	2295626..2295886 (+)	261	WP_002434577.1	hypothetical protein	-
V6C47_RS11120 (V6C47_11115)	-	2295890..2296639 (-)	750	WP_367121162.1	amidohydrolase family protein	-
V6C47_RS11125 (V6C47_11120)	-	2296796..2297053 (+)	258	WP_002434565.1	helix-turn-helix domain-containing protein	-
V6C47_RS11130 (V6C47_11125)	-	2297124..2297291 (-)	168	WP_367121164.1	hypothetical protein	-
V6C47_RS11135 (V6C47_11130)	-	2297278..2297478 (-)	201	WP_367121165.1	hypothetical protein	-
V6C47_RS11140 (V6C47_11135)	-	2297562..2298125 (-)	564	WP_367121167.1	DUF5067 domain-containing protein	-
V6C47_RS11145 (V6C47_11140)	-	2298262..2298516 (-)	255	WP_002454422.1	hypothetical protein	-
V6C47_RS11150 (V6C47_11145)	rpsR	2298842..2299084 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
V6C47_RS11155 (V6C47_11150)	ssbA	2299131..2299640 (-)	510	WP_367121169.1	single-stranded DNA-binding protein	Machinery gene
V6C47_RS11160 (V6C47_11155)	rpsF	2299662..2299958 (-)	297	WP_002434058.1	30S ribosomal protein S6	-
V6C47_RS11165 (V6C47_11160)	-	2300091..2300255 (-)	165	Protein_2150	recombinase family protein	-
V6C47_RS11170 (V6C47_11165)	-	2300371..2301117 (-)	747	WP_002434512.1	HAD family hydrolase	-
V6C47_RS11175 (V6C47_11170)	-	2301121..2301537 (-)	417	WP_229716969.1	NUDIX domain-containing protein	-
V6C47_RS11180 (V6C47_11175)	-	2301534..2302424 (-)	891	WP_367121170.1	DMT family transporter	-
V6C47_RS11185 (V6C47_11180)	-	2302424..2302807 (-)	384	WP_037550912.1	NUDIX hydrolase	-
V6C47_RS11190 (V6C47_11185)	-	2302820..2303497 (-)	678	WP_367121172.1	hypothetical protein	-
V6C47_RS11195 (V6C47_11190)	-	2303501..2304640 (-)	1140	WP_367121174.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18654.16 Da
• Isoelectric Point: 4.5778

>NTDB_id=938187 V6C47_RS11155 WP_367121169.1 2299131..2299640(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDLQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=938187 V6C47_RS11155 WP_367121169.1 2299131..2299640(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTGCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACTCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	55.172	100	0.568
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361