Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   ANSO36C_RS07900 Genome accession   NZ_AP025732
Coordinates   1794962..1796968 (+) Length   668 a.a.
NCBI ID   WP_251959077.1    Uniprot ID   -
Organism   Nostoc cf. commune SO-36     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1789962..1801968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANSO36C_RS07885 (ANSO36C_15690) - 1791203..1791409 (+) 207 WP_251959075.1 hypothetical protein -
  ANSO36C_RS07890 (ANSO36C_15700) dnaK 1791605..1793560 (-) 1956 WP_251960278.1 molecular chaperone DnaK -
  ANSO36C_RS07895 (ANSO36C_15710) grpE 1793788..1794534 (-) 747 WP_251959076.1 nucleotide exchange factor GrpE -
  ANSO36C_RS07900 (ANSO36C_15720) pilB/pilB1 1794962..1796968 (+) 2007 WP_251959077.1 GspE/PulE family protein Machinery gene
  ANSO36C_RS07905 (ANSO36C_15730) pilT 1797094..1798221 (+) 1128 WP_251959078.1 type IV pilus twitching motility protein PilT Machinery gene
  ANSO36C_RS07910 (ANSO36C_15740) - 1798326..1799548 (+) 1223 Protein_1581 type II secretion system F family protein -
  ANSO36C_RS07915 (ANSO36C_15760) - 1799663..1800223 (+) 561 WP_251959079.1 hypothetical protein -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 74505.35 Da        Isoelectric Point: 5.2490

>NTDB_id=93816 ANSO36C_RS07900 WP_251959077.1 1794962..1796968(+) (pilB/pilB1) [Nostoc cf. commune SO-36]
MTYSSPQRRSTALTTRTEFSPFGNKLVQSGYVNTEQMRQALIESRKSGRPLTEVLESITGQQLSPELLRQYKKQQLFELK
ILYGVEFLDPEVSSIGNTMMGNLIETLIPVDICRRHRLVPLSKHEDQTPPSVLVAMVAPDNLEASDDLNRILRPQGLALQ
RMVITQEDYQQLINQYLDEMAVKQKHLEQEKFTDINQDLENLGNLDLSDAPEEMEADLGAAMKGAEDAPVINLVNRILAK
ALHEGVSDIHIEPQEENLRIRFRKDGVLREAFDPLPKKIIPAVTARFKIISNLDIAERRLPQDGRIRRMFEGRKVDFRVN
TLPSRYGEKVVLRILDNSSTQLGLNKLITDPETLNIVKDMVSRPFGLILVTGPTGSGKTTSLYSALSEKNDPGINISTVE
DPIEYSLPGITQVQVIREKGLDFATALRAFLRQDPDVLLVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPGAIARLGE
MGIEPFMVSSSLIGVLAQRLVRRVCSECRIAYTPTTEELARYGLSASSDVGVTFYKANTLTLDAIAEAKGKNQLCSKCNG
VGYKGRCGVYEVMRVTENLQTLINEDAPTERIKEVAIEEGMKTLLAYSLDLVREGSTTLEEVERVTFTDTGLEAELKAKR
KTGLTCRSCDATLKQEWLDCPYCMTSRF

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=93816 ANSO36C_RS07900 WP_251959077.1 1794962..1796968(+) (pilB/pilB1) [Nostoc cf. commune SO-36]
ATGACTTACTCGTCACCACAACGGCGCAGTACCGCTCTAACTACCAGAACAGAGTTTTCGCCCTTTGGCAACAAGCTAGT
GCAATCTGGCTATGTCAATACCGAACAGATGAGGCAGGCATTAATTGAAAGCCGCAAATCTGGCAGACCCCTAACGGAAG
TATTAGAGTCAATCACTGGGCAACAACTATCACCTGAGTTGCTCAGGCAATACAAAAAACAGCAACTATTTGAACTCAAA
ATACTATACGGTGTAGAATTCCTCGATCCTGAAGTCAGCTCCATTGGCAACACGATGATGGGGAACCTGATTGAAACCCT
CATCCCAGTGGATATCTGTCGTCGCCATCGTTTAGTACCACTGTCAAAACACGAAGACCAGACCCCGCCCTCAGTTTTAG
TGGCGATGGTTGCTCCAGATAATCTAGAGGCTTCCGATGACCTGAACCGCATCTTGCGCCCCCAAGGCTTGGCGTTGCAG
CGCATGGTGATTACCCAGGAAGATTACCAACAGCTAATCAACCAATATCTGGATGAAATGGCTGTTAAGCAAAAGCACCT
AGAACAAGAAAAGTTTACAGATATTAATCAGGATTTAGAAAACCTCGGAAATCTCGATCTTTCCGATGCTCCTGAAGAAA
TGGAGGCTGATCTAGGGGCGGCGATGAAGGGTGCAGAGGATGCCCCAGTCATCAACCTAGTTAACAGAATCCTGGCTAAA
GCCTTACATGAGGGCGTTTCTGACATACATATCGAACCGCAAGAAGAAAACTTACGCATTCGCTTTCGCAAGGATGGCGT
ACTGCGCGAAGCTTTCGATCCCCTACCGAAAAAAATCATCCCGGCAGTTACAGCCCGATTTAAAATCATCTCCAATCTAG
ACATTGCGGAACGCCGTTTGCCCCAAGATGGACGCATTCGCCGGATGTTTGAGGGACGTAAGGTGGATTTCCGGGTAAAT
ACCTTACCCAGTCGCTACGGGGAAAAGGTAGTGCTGCGGATTTTGGATAACTCCTCCACCCAACTGGGATTAAATAAGTT
AATTACCGATCCAGAGACTTTAAATATTGTCAAGGATATGGTAAGTCGTCCCTTTGGTCTAATTTTGGTGACTGGGCCAA
CTGGTTCTGGGAAAACAACTTCGTTGTATTCTGCACTCTCAGAAAAGAATGATCCCGGAATTAATATCAGTACTGTGGAA
GACCCAATTGAGTACAGTCTTCCAGGGATTACTCAAGTACAGGTGATTCGGGAAAAAGGGCTAGATTTTGCTACCGCGTT
GCGGGCTTTTTTGCGACAAGATCCAGACGTGCTACTGGTGGGTGAAACGCGGGATAAGGAAACGGCAAAAACAGCAATTG
AAGCTGCCTTGACGGGTCACTTGGTATTAACTACCTTACATACCAATGATGCCCCAGGAGCGATCGCTCGTTTGGGAGAA
ATGGGGATTGAGCCTTTCATGGTTTCTAGTTCCCTAATTGGCGTTTTAGCTCAACGTTTGGTGCGGCGTGTATGTTCTGA
ATGTCGTATTGCCTACACTCCCACAACCGAGGAACTAGCTCGTTATGGTCTATCAGCTTCCTCAGATGTAGGAGTCACCT
TTTACAAAGCTAACACCTTGACATTAGATGCGATCGCAGAAGCCAAAGGCAAAAATCAGCTTTGCTCAAAATGTAATGGG
GTCGGCTACAAAGGGCGTTGTGGTGTTTATGAAGTTATGCGAGTCACCGAAAACCTGCAAACTCTCATCAACGAAGATGC
ACCCACAGAACGAATCAAGGAAGTGGCAATAGAAGAGGGCATGAAAACCTTACTGGCTTACAGTTTGGACTTAGTGCGAG
AAGGTTCTACCACCCTAGAAGAAGTAGAACGAGTAACGTTTACTGATACTGGTTTGGAAGCCGAGTTAAAAGCCAAACGC
AAGACTGGTCTTACCTGCCGGAGTTGCGATGCCACATTGAAACAAGAATGGCTGGATTGCCCCTACTGTATGACATCTCG
GTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(236-503)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(64-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

66.518

100

0.669
  pilF Thermus thermophilus HB27

39.478

91.766

0.362

Multiple sequence alignment