Detailed information NTG0938154

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6D01_RS11740
• Genome accession: NZ_CP145244
• Coordinates: 2393015..2393524 (-)
• Length: 169 a.a.
• NCBI ID: WP_023349922.1
• Uniprot ID: A0A7X9WHU6
• Organism: Staphylococcus capitis subsp. urealyticus strain Sc1365670
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2388015..2398524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6D01_RS11700 (V6D01_11675)	-	2388952..2389206 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
V6D01_RS11705 (V6D01_11680)	-	2389508..2389768 (+)	261	WP_002434577.1	hypothetical protein	-
V6D01_RS11710 (V6D01_11685)	-	2389772..2390521 (-)	750	WP_023349917.1	amidohydrolase	-
V6D01_RS11715 (V6D01_11690)	-	2390678..2390935 (+)	258	WP_002434565.1	helix-turn-helix transcriptional regulator	-
V6D01_RS11720 (V6D01_11695)	-	2391006..2391359 (-)	354	WP_023349918.1	hypothetical protein	-
V6D01_RS11725 (V6D01_11700)	-	2391443..2392006 (-)	564	WP_037560395.1	DUF5067 domain-containing protein	-
V6D01_RS11730 (V6D01_11705)	-	2392143..2392397 (-)	255	WP_023349920.1	hypothetical protein	-
V6D01_RS11735 (V6D01_11710)	rpsR	2392726..2392968 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
V6D01_RS11740 (V6D01_11715)	ssbA	2393015..2393524 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
V6D01_RS11745 (V6D01_11720)	rpsF	2393546..2393842 (-)	297	WP_002445146.1	30S ribosomal protein S6	-
V6D01_RS11750 (V6D01_11725)	-	2393975..2394121 (-)	147	Protein_2241	recombinase family protein	-
V6D01_RS11755 (V6D01_11730)	-	2394255..2395001 (-)	747	WP_023349924.1	HAD family hydrolase	-
V6D01_RS11760 (V6D01_11735)	-	2395005..2395421 (-)	417	WP_023349925.1	NUDIX domain-containing protein	-
V6D01_RS11765 (V6D01_11740)	-	2395418..2396308 (-)	891	WP_023349926.1	DMT family transporter	-
V6D01_RS11770 (V6D01_11745)	-	2396308..2396691 (-)	384	WP_037550912.1	NUDIX domain-containing protein	-
V6D01_RS11775 (V6D01_11750)	-	2396704..2397381 (-)	678	WP_002434477.1	hypothetical protein	-
V6D01_RS11780 (V6D01_11755)	-	2397385..2398524 (-)	1140	WP_226859625.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18672.18 Da
• Isoelectric Point: 4.5778

>NTDB_id=938154 V6D01_RS11740 WP_023349922.1 2393015..2393524(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=938154 V6D01_RS11740 WP_023349922.1 2393015..2393524(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365670]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A7X9WHU6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361