Detailed information NTG0938088

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6C67_RS12100
• Genome accession: NZ_CP145238
• Coordinates: 2417838..2418347 (-)
• Length: 169 a.a.
• NCBI ID: WP_002434425.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. urealyticus strain Sc1365674
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2412838..2423347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C67_RS12060 (V6C67_12030)	-	2413784..2414038 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
V6C67_RS12065 (V6C67_12035)	-	2414341..2414601 (+)	261	WP_002434577.1	hypothetical protein	-
V6C67_RS12070 (V6C67_12040)	-	2414605..2415354 (-)	750	WP_002434558.1	amidohydrolase	-
V6C67_RS12075 (V6C67_12045)	-	2415511..2415768 (+)	258	WP_002434565.1	helix-turn-helix transcriptional regulator	-
V6C67_RS12080 (V6C67_12050)	-	2415839..2416192 (-)	354	WP_002434504.1	membrane protein	-
V6C67_RS12085 (V6C67_12055)	-	2416276..2416839 (-)	564	WP_002434145.1	DUF5067 domain-containing protein	-
V6C67_RS12090 (V6C67_12060)	-	2416976..2417221 (-)	246	WP_002434479.1	hypothetical protein	-
V6C67_RS12095 (V6C67_12065)	rpsR	2417549..2417791 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
V6C67_RS12100 (V6C67_12070)	ssbA	2417838..2418347 (-)	510	WP_002434425.1	single-stranded DNA-binding protein	Machinery gene
V6C67_RS12105 (V6C67_12075)	rpsF	2418369..2418665 (-)	297	WP_002434058.1	30S ribosomal protein S6	-
V6C67_RS12110 (V6C67_12080)	-	2418798..2418961 (-)	164	Protein_2313	recombinase family protein	-
V6C67_RS12115 (V6C67_12085)	-	2419077..2419823 (-)	747	WP_002434512.1	HAD family hydrolase	-
V6C67_RS12120 (V6C67_12090)	-	2419827..2420243 (-)	417	WP_232502465.1	NUDIX domain-containing protein	-
V6C67_RS12125 (V6C67_12095)	-	2420240..2421130 (-)	891	WP_002469640.1	DMT family transporter	-
V6C67_RS12130 (V6C67_12100)	-	2421130..2421513 (-)	384	WP_002434156.1	NUDIX domain-containing protein	-
V6C67_RS12135 (V6C67_12105)	-	2421526..2422203 (-)	678	WP_002434477.1	hypothetical protein	-
V6C67_RS12140 (V6C67_12110)	-	2422207..2423346 (-)	1140	WP_255263163.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18688.18 Da
• Isoelectric Point: 4.5778

>NTDB_id=938088 V6C67_RS12100 WP_002434425.1 2417838..2418347(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365674]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=938088 V6C67_RS12100 WP_002434425.1 2417838..2418347(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365674]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACTCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	55.172	100	0.568
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361