NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	V6C48_RS12275	Genome accession	NZ_CP145236
Coordinates	2503134..2503643 (-)	Length	169 a.a.
NCBI ID	WP_023349922.1	Uniprot ID	A0A7X9WHU6
Organism	Staphylococcus capitis subsp. urealyticus strain Sc1365682
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2498134..2508643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C48_RS12235 (V6C48_12210)	-	2499071..2499325 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
V6C48_RS12240 (V6C48_12215)	-	2499627..2499887 (+)	261	WP_002434577.1	hypothetical protein	-
V6C48_RS12245 (V6C48_12220)	-	2499891..2500640 (-)	750	WP_023349917.1	amidohydrolase	-
V6C48_RS12250 (V6C48_12225)	-	2500797..2501054 (+)	258	WP_002434565.1	helix-turn-helix transcriptional regulator	-
V6C48_RS12255 (V6C48_12230)	-	2501125..2501478 (-)	354	WP_023349918.1	hypothetical protein	-
V6C48_RS12260 (V6C48_12235)	-	2501562..2502125 (-)	564	WP_037560395.1	DUF5067 domain-containing protein	-
V6C48_RS12265 (V6C48_12240)	-	2502262..2502516 (-)	255	WP_023349920.1	hypothetical protein	-
V6C48_RS12270 (V6C48_12245)	rpsR	2502845..2503087 (-)	243	WP_023349921.1	30S ribosomal protein S18	-
V6C48_RS12275 (V6C48_12250)	ssbA	2503134..2503643 (-)	510	WP_023349922.1	single-stranded DNA-binding protein	Machinery gene
V6C48_RS12280 (V6C48_12255)	rpsF	2503665..2503961 (-)	297	WP_002445146.1	30S ribosomal protein S6	-
V6C48_RS12285 (V6C48_12260)	-	2504094..2504240 (-)	147	Protein_2370	recombinase family protein	-
V6C48_RS12290 (V6C48_12265)	-	2504374..2505120 (-)	747	WP_023349924.1	HAD family hydrolase	-
V6C48_RS12295 (V6C48_12270)	-	2505124..2505540 (-)	417	WP_023349925.1	NUDIX domain-containing protein	-
V6C48_RS12300 (V6C48_12275)	-	2505537..2506427 (-)	891	WP_023349926.1	DMT family transporter	-
V6C48_RS12305 (V6C48_12280)	-	2506427..2506810 (-)	384	WP_037550912.1	NUDIX domain-containing protein	-
V6C48_RS12310 (V6C48_12285)	-	2506823..2507500 (-)	678	WP_023349928.1	hypothetical protein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18672.18 Da Isoelectric Point: 4.5778

                                >NTDB_id=938054 V6C48_RS12275 WP_023349922.1 2503134..2503643(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365682]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=938054 V6C48_RS12275 WP_023349922.1 2503134..2503643(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365682]

ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT

TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT

AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA

TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC

GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361

Detailed information NTG0938054