Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V6C68_RS12315 Genome accession   NZ_CP145228
Coordinates   2510502..2511011 (-) Length   169 a.a.
NCBI ID   WP_023349922.1    Uniprot ID   A0A7X9WHU6
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365695     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2508165..2527883 2510502..2511011 within 0


Gene organization within MGE regions


Location: 2508165..2527883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C68_RS12290 (V6C68_12260) - 2508165..2508422 (+) 258 WP_002434565.1 helix-turn-helix transcriptional regulator -
  V6C68_RS12295 (V6C68_12265) - 2508493..2508846 (-) 354 WP_023349918.1 hypothetical protein -
  V6C68_RS12300 (V6C68_12270) - 2508930..2509493 (-) 564 WP_037560395.1 DUF5067 domain-containing protein -
  V6C68_RS12305 (V6C68_12275) - 2509630..2509884 (-) 255 WP_023349920.1 hypothetical protein -
  V6C68_RS12310 (V6C68_12280) rpsR 2510213..2510455 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  V6C68_RS12315 (V6C68_12285) ssbA 2510502..2511011 (-) 510 WP_023349922.1 single-stranded DNA-binding protein Machinery gene
  V6C68_RS12320 (V6C68_12290) rpsF 2511033..2511329 (-) 297 WP_002445146.1 30S ribosomal protein S6 -
  V6C68_RS12325 (V6C68_12295) - 2511462..2511608 (-) 147 Protein_2375 recombinase family protein -
  V6C68_RS12330 (V6C68_12300) - 2511742..2512488 (-) 747 WP_023349924.1 HAD family hydrolase -
  V6C68_RS12335 (V6C68_12305) - 2512492..2512908 (-) 417 WP_023349925.1 NUDIX domain-containing protein -
  V6C68_RS12340 (V6C68_12310) - 2512905..2513069 (-) 165 WP_229716968.1 hypothetical protein -
  V6C68_RS12345 (V6C68_12315) - 2513263..2513937 (-) 675 WP_001106057.1 IS6-like element IS257 family transposase -
  V6C68_RS12350 (V6C68_12320) - 2514003..2514956 (+) 954 WP_002500634.1 replication initiator protein A -
  V6C68_RS12355 (V6C68_12325) - 2516671..2517345 (+) 675 WP_012818128.1 IS6 family transposase -
  V6C68_RS12360 (V6C68_12330) - 2517420..2517782 (-) 363 WP_002441953.1 hypothetical protein -
  V6C68_RS12365 (V6C68_12335) - 2517905..2518591 (+) 687 WP_002441952.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  V6C68_RS12370 (V6C68_12340) - 2518860..2518994 (-) 135 WP_002436888.1 beta-class phenol-soluble modulin -
  V6C68_RS12375 (V6C68_12345) - 2519226..2519327 (-) 102 WP_100066290.1 SE2200 family small protein -
  V6C68_RS12380 (V6C68_12350) lqo 2519346..2520842 (-) 1497 WP_002441949.1 L-lactate dehydrogenase (quinone) -
  V6C68_RS12385 (V6C68_12355) - 2521061..2521399 (-) 339 WP_002436858.1 helix-turn-helix domain-containing protein -
  V6C68_RS12390 (V6C68_12360) hxlA 2521502..2522137 (+) 636 WP_002441945.1 3-hexulose-6-phosphate synthase -
  V6C68_RS12395 (V6C68_12365) - 2522176..2522694 (+) 519 WP_002441943.1 type 1 glutamine amidotransferase domain-containing protein -
  V6C68_RS12400 (V6C68_12370) - 2522962..2523057 (-) 96 WP_002441941.1 type I toxin-antitoxin system Fst family toxin -
  V6C68_RS12410 (V6C68_12380) - 2524389..2525006 (+) 618 WP_002441958.1 CadD family cadmium resistance transporter -
  V6C68_RS12415 (V6C68_12385) - 2525025..2525372 (+) 348 WP_002441960.1 metalloregulator ArsR/SmtB family transcription factor -
  V6C68_RS12420 (V6C68_12390) - 2525537..2525632 (+) 96 WP_000493115.1 type I toxin-antitoxin system Fst family toxin -
  V6C68_RS12425 (V6C68_12395) - 2525882..2526430 (+) 549 WP_002441962.1 hypothetical protein -
  V6C68_RS12430 (V6C68_12400) - 2526507..2527034 (-) 528 WP_001831394.1 GNAT family protein -
  V6C68_RS12435 (V6C68_12405) - 2527227..2527883 (-) 657 WP_001831384.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18672.18 Da        Isoelectric Point: 4.5778

>NTDB_id=937983 V6C68_RS12315 WP_023349922.1 2510502..2511011(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=937983 V6C68_RS12315 WP_023349922.1 2510502..2511011(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365695]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.562
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361