Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V6C75_RS11855 Genome accession   NZ_CP145221
Coordinates   2447943..2448452 (-) Length   169 a.a.
NCBI ID   WP_023349922.1    Uniprot ID   A0A7X9WHU6
Organism   Staphylococcus capitis subsp. urealyticus strain Sc1365706     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2442943..2453452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C75_RS11820 - 2443877..2444131 (-) 255 WP_002434433.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  V6C75_RS11825 - 2444696..2445445 (-) 750 WP_058121722.1 amidohydrolase family protein -
  V6C75_RS11830 - 2445602..2445859 (+) 258 WP_002434565.1 helix-turn-helix domain-containing protein -
  V6C75_RS11835 - 2445930..2446283 (-) 354 WP_058121721.1 hypothetical protein -
  V6C75_RS11840 - 2446367..2446930 (-) 564 WP_037550921.1 DUF5067 domain-containing protein -
  V6C75_RS11845 - 2447072..2447326 (-) 255 WP_103157086.1 hypothetical protein -
  V6C75_RS11850 rpsR 2447654..2447896 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  V6C75_RS11855 ssbA 2447943..2448452 (-) 510 WP_023349922.1 single-stranded DNA-binding protein Machinery gene
  V6C75_RS11860 rpsF 2448474..2448770 (-) 297 WP_002434058.1 30S ribosomal protein S6 -
  V6C75_RS11865 - 2448903..2449067 (-) 165 Protein_2287 recombinase family protein -
  V6C75_RS11870 - 2449182..2449928 (-) 747 WP_002434512.1 HAD family hydrolase -
  V6C75_RS11875 - 2449932..2450348 (-) 417 WP_367081080.1 NUDIX domain-containing protein -
  V6C75_RS11880 - 2450345..2451235 (-) 891 WP_058121568.1 DMT family transporter -
  V6C75_RS11885 - 2451235..2451618 (-) 384 WP_037550912.1 NUDIX hydrolase -
  V6C75_RS11890 - 2451631..2452308 (-) 678 WP_002434477.1 hypothetical protein -
  V6C75_RS11895 - 2452312..2453451 (-) 1140 WP_227416284.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18672.18 Da        Isoelectric Point: 4.5778

>NTDB_id=937913 V6C75_RS11855 WP_023349922.1 2447943..2448452(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=937913 V6C75_RS11855 WP_023349922.1 2447943..2448452(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1365706]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTATGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.562
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361