Detailed information NTG0937706

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: V6C54_RS11685
• Genome accession: NZ_CP145201
• Coordinates: 2411528..2412037 (-)
• Length: 169 a.a.
• NCBI ID: WP_047796980.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. urealyticus strain Sc1516943
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2406528..2417037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C54_RS11645 (V6C54_11650)	-	2407464..2407718 (-)	255	WP_002434433.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
V6C54_RS11650 (V6C54_11655)	-	2408020..2408280 (+)	261	WP_047796984.1	hypothetical protein	-
V6C54_RS11655 (V6C54_11660)	-	2408284..2409033 (-)	750	WP_047796983.1	amidohydrolase	-
V6C54_RS11660 (V6C54_11665)	-	2409190..2409447 (+)	258	WP_002434565.1	helix-turn-helix transcriptional regulator	-
V6C54_RS11665 (V6C54_11670)	-	2409518..2409871 (-)	354	WP_002434504.1	membrane protein	-
V6C54_RS11670 (V6C54_11675)	-	2409955..2410389 (-)	435	WP_367009710.1	DUF5067 domain-containing protein	-
V6C54_RS11675 (V6C54_11680)	-	2410659..2410913 (-)	255	WP_047796981.1	hypothetical protein	-
V6C54_RS11680 (V6C54_11685)	rpsR	2411239..2411481 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
V6C54_RS11685 (V6C54_11690)	ssbA	2411528..2412037 (-)	510	WP_047796980.1	single-stranded DNA-binding protein	Machinery gene
V6C54_RS11690 (V6C54_11695)	rpsF	2412059..2412355 (-)	297	WP_367009711.1	30S ribosomal protein S6	-
V6C54_RS11695 (V6C54_11700)	-	2412488..2412685 (-)	198	Protein_2252	recombinase family protein	-
V6C54_RS11700 (V6C54_11705)	-	2412767..2413513 (-)	747	WP_047796978.1	HAD family hydrolase	-
V6C54_RS11705 (V6C54_11710)	-	2413517..2413933 (-)	417	WP_233420434.1	NUDIX domain-containing protein	-
V6C54_RS11710 (V6C54_11715)	-	2413930..2414820 (-)	891	WP_047796976.1	DMT family transporter	-
V6C54_RS11715 (V6C54_11720)	-	2414820..2415203 (-)	384	WP_037550912.1	NUDIX domain-containing protein	-
V6C54_RS11720 (V6C54_11725)	-	2415216..2415893 (-)	678	WP_047796975.1	hypothetical protein	-
V6C54_RS11725 (V6C54_11730)	-	2415897..2416937 (-)	1041	WP_233420433.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18653.13 Da
• Isoelectric Point: 4.5762

>NTDB_id=937706 V6C54_RS11685 WP_047796980.1 2411528..2412037(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQHSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=937706 V6C54_RS11685 WP_047796980.1 2411528..2412037(-) (ssbA) [Staphylococcus capitis subsp. urealyticus strain Sc1516943]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGGCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACATTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	54.913	100	0.562
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361