Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLID5_RS11365 | Genome accession | NZ_AP025701 |
| Coordinates | 2364568..2365068 (-) | Length | 166 a.a. |
| NCBI ID | WP_047207005.1 | Uniprot ID | A0A443L609 |
| Organism | Lactococcus lactis strain ID-5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2359568..2370068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLID5_RS11340 (LLID5_22250) | gnd | 2360638..2361543 (-) | 906 | WP_251919413.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LLID5_RS11345 (LLID5_22260) | - | 2361907..2362755 (+) | 849 | WP_012898662.1 | MurR/RpiR family transcriptional regulator | - |
| LLID5_RS11350 (LLID5_22270) | - | 2362793..2363101 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| LLID5_RS11355 (LLID5_22280) | - | 2363175..2363948 (-) | 774 | WP_129881196.1 | metallophosphoesterase | - |
| LLID5_RS11360 (LLID5_22290) | rpsR | 2364148..2364393 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LLID5_RS11365 (LLID5_22300) | ssb | 2364568..2365068 (-) | 501 | WP_047207005.1 | single-stranded DNA-binding protein | Machinery gene |
| LLID5_RS11370 (LLID5_22310) | rpsF | 2365098..2365391 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LLID5_RS11375 (LLID5_22320) | - | 2365583..2366437 (-) | 855 | WP_251918801.1 | undecaprenyl-diphosphate phosphatase | - |
| LLID5_RS11380 (LLID5_22330) | - | 2366960..2368426 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18274.10 Da Isoelectric Point: 5.2279
>NTDB_id=93768 LLID5_RS11365 WP_047207005.1 2364568..2365068(-) (ssb) [Lactococcus lactis strain ID-5]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGASAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGASAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=93768 LLID5_RS11365 WP_047207005.1 2364568..2365068(-) (ssb) [Lactococcus lactis strain ID-5]
ATGATTAATAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAATCGTCAATTTAAGAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAGCTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGAC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGACGCTGATCCATTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCGTTCTAA
ATGATTAATAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAATCGTCAATTTAAGAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAGCTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGAC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGACGCTGATCCATTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |