Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACET1N_RS25040 Genome accession   NZ_CP168984
Coordinates   4925806..4926342 (-) Length   178 a.a.
NCBI ID   WP_373964562.1    Uniprot ID   -
Organism   Escherichia coli strain UTME-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4920806..4931342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1N_RS25020 (ACET1N_25020) soxR 4922537..4923001 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ACET1N_RS25025 (ACET1N_25025) soxS 4923087..4923410 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ACET1N_RS25030 (ACET1N_25030) pdeC 4923413..4924999 (-) 1587 WP_000019567.1 c-di-GMP phosphodiesterase PdeC -
  ACET1N_RS25035 (ACET1N_25035) yjcB 4925426..4925707 (+) 282 WP_001295689.1 YjcB family protein -
  ACET1N_RS25040 (ACET1N_25040) ssb 4925806..4926342 (-) 537 WP_373964562.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACET1N_RS25045 (ACET1N_25045) uvrA 4926597..4929419 (+) 2823 WP_113415984.1 excinuclease ABC subunit UvrA Machinery gene
  ACET1N_RS25050 (ACET1N_25050) yjbR 4929454..4929810 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACET1N_RS25055 (ACET1N_25055) yjbQ 4929814..4930230 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACET1N_RS25060 (ACET1N_25060) aphA 4930341..4931054 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18990.99 Da        Isoelectric Point: 5.2358

>NTDB_id=937467 ACET1N_RS25040 WP_373964562.1 4925806..4926342(-) (ssb) [Escherichia coli strain UTME-3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVSSEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=937467 ACET1N_RS25040 WP_373964562.1 4925806..4926342(-) (ssb) [Escherichia coli strain UTME-3]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTATCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGTACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.59
  ssb Neisseria meningitidis MC58

47.514

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.483