Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V5F86_RS20805 Genome accession   NZ_CP145137
Coordinates   4113216..4113734 (-) Length   172 a.a.
NCBI ID   WP_014115887.1    Uniprot ID   A0A9Q4E2B6
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4108216..4118734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS20775 (V5F86_20780) - 4108723..4110078 (+) 1356 WP_338443593.1 MFS transporter -
  V5F86_RS20780 (V5F86_20785) - 4110109..4110666 (-) 558 WP_242733453.1 sugar O-acetyltransferase -
  V5F86_RS20785 (V5F86_20790) - 4110684..4111064 (-) 381 WP_338443594.1 VOC family protein -
  V5F86_RS20790 (V5F86_20795) - 4111120..4112055 (-) 936 WP_338443595.1 LacI family DNA-binding transcriptional regulator -
  V5F86_RS20795 (V5F86_20800) xth 4112114..4112872 (-) 759 WP_079287689.1 exodeoxyribonuclease III -
  V5F86_RS20800 (V5F86_20805) rpsR 4112933..4113172 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  V5F86_RS20805 (V5F86_20810) ssbA 4113216..4113734 (-) 519 WP_014115887.1 single-stranded DNA-binding protein SsbA Machinery gene
  V5F86_RS20810 (V5F86_20815) rpsF 4113775..4114062 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  V5F86_RS20815 (V5F86_20820) ychF 4114173..4115273 (-) 1101 WP_061187102.1 redox-regulated ATPase YchF -
  V5F86_RS20820 (V5F86_20825) - 4115400..4117403 (-) 2004 WP_338443597.1 molybdopterin-dependent oxidoreductase -
  V5F86_RS20825 (V5F86_20830) - 4117454..4117660 (-) 207 WP_003219236.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18714.29 Da        Isoelectric Point: 4.7621

>NTDB_id=937455 V5F86_RS20805 WP_014115887.1 4113216..4113734(-) (ssbA) [Bacillus spizizenii strain kcgeb_sc]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=937455 V5F86_RS20805 WP_014115887.1 4113216..4113734(-) (ssbA) [Bacillus spizizenii strain kcgeb_sc]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAATAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTCGGGGGAAATCAAAACAACCAGAAACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378