Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   R8621_RS06640 Genome accession   NZ_AP028370
Coordinates   1297547..1298554 (+) Length   335 a.a.
NCBI ID   WP_002853804.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10767     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292547..1303554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8621_RS08500 - 1294223..1296482 (-) 2260 Protein_1284 autotransporter outer membrane beta-barrel domain-containing protein -
  R8621_RS06635 (B10767_13080) - 1297046..1297456 (-) 411 WP_002783915.1 hypothetical protein -
  R8621_RS06640 (B10767_13090) ruvB 1297547..1298554 (+) 1008 WP_002853804.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R8621_RS06645 (B10767_13100) amaA 1298558..1299601 (+) 1044 WP_087700258.1 AI-2E family transporter -
  R8621_RS06650 (B10767_13110) fumC 1299631..1301022 (-) 1392 WP_087700260.1 class II fumarate hydratase -
  R8621_RS06655 (B10767_13120) glmS 1301158..1302954 (-) 1797 WP_002853885.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37383.91 Da        Isoelectric Point: 4.8396

>NTDB_id=93742 R8621_RS06640 WP_002853804.1 1297547..1298554(+) (ruvB) [Campylobacter jejuni strain BCH-10767]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFITAAKKRNECLDHILFSGPAGLGKTTLANIISYEMDANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=93742 R8621_RS06640 WP_002853804.1 1297547..1298554(+) (ruvB) [Campylobacter jejuni strain BCH-10767]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAACTGCAGCCAAAAAACGCAACGAATGTTTAGATC
ATATACTTTTTAGCGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATATCCTATGAAATGGACGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGGGATTTAGCAGCCATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATCGAAGAAGTGCTTTACCCTGCGATGGAAGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATTGATTTACCAAAATTTACTCTCATAGGGGCTACAACACGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGCATGCAATTTAGATTAGAATTTTACAAAGATAGTGAACTTGC
CCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCTTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACTGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(255-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

69.461

99.701

0.693
  ruvB Bacillus subtilis subsp. subtilis str. 168

52.454

97.313

0.51
  ruvB Synechocystis sp. PCC 6803

49.533

95.821

0.475
  ruvB Streptococcus pneumoniae TIGR4

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae R6

48.328

98.209

0.475
  ruvB Streptococcus pneumoniae D39

48.328

98.209

0.475

Multiple sequence alignment