Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   V5G10_RS02340 Genome accession   NZ_CP145086
Coordinates   448603..449211 (+) Length   202 a.a.
NCBI ID   WP_353425388.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_C_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443603..454211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G10_RS02315 (V5G10_02315) - 444050..444382 (+) 333 WP_003687908.1 hypothetical protein -
  V5G10_RS02320 (V5G10_02320) - 444709..445218 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G10_RS02325 (V5G10_02325) - 445448..446029 (-) 582 WP_003698180.1 superoxide dismutase -
  V5G10_RS02330 (V5G10_02330) dnaB 446192..447598 (+) 1407 WP_047920816.1 replicative DNA helicase -
  V5G10_RS02335 (V5G10_02335) pilH 447906..448571 (+) 666 WP_050170995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G10_RS02340 (V5G10_02340) pilI 448603..449211 (+) 609 WP_353425388.1 type IV pilus modification protein PilV Machinery gene
  V5G10_RS02345 (V5G10_02345) pilJ 449208..450170 (+) 963 WP_082277595.1 PilW family protein Machinery gene
  V5G10_RS02350 (V5G10_02350) pilK 450149..450745 (+) 597 WP_082277593.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G10_RS02355 (V5G10_02355) pilL 450747..451220 (+) 474 WP_192941126.1 PilX family type IV pilin Machinery gene
  V5G10_RS02360 (V5G10_02360) - 451290..451598 (-) 309 WP_050170999.1 AzlD family protein -
  V5G10_RS02365 (V5G10_02365) - 451595..452303 (-) 709 Protein_461 AzlC family ABC transporter permease -
  V5G10_RS02370 (V5G10_02370) dut 452469..452921 (+) 453 WP_003702446.1 dUTP diphosphatase -
  V5G10_RS02375 (V5G10_02375) dapC 452999..454186 (+) 1188 WP_082277589.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21963.81 Da        Isoelectric Point: 4.7004

>NTDB_id=937080 V5G10_RS02340 WP_353425388.1 448603..449211(+) (pilI) [Neisseria gonorrhoeae strain WHO_C_2024]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLINPTIDPDGNKKN
YNLYTESYTSTSSDGDFALDKLKSKKDLAKAQLDRFGYELKNALPDAVAIRYAVCKDSSGDAPTLSGNTFSSNCDNKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=937080 V5G10_RS02340 WP_353425388.1 448603..449211(+) (pilI) [Neisseria gonorrhoeae strain WHO_C_2024]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTGGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATCAATCCGACCATTGATCCGGACGGCAACAAGAAAAAC
TATAATCTTTACACTGAGTCGTACACCTCCACTTCTTCTGACGGCGATTTTGCACTTGATAAGCTTAAAAGCAAGAAGGA
TTTGGCAAAGGCCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCGTTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGGCAATACTTTTTCTTCAAATTGCGACAATAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

93.069

100

0.931
  pilV Neisseria gonorrhoeae MS11

93.069

100

0.931
  pilV Neisseria meningitidis 8013

86.408

100

0.881